Evidence map›Paper›PMID 27023787›Full record

ArticlePloS one2016

Genetic Diversity of Plasmodium falciparum Populations in Malaria Declining Areas of Sabah, East Malaysia.

Mohd Ridzuan Mohd Abd Razak, Umi Rubiah Sastu, Nor Azrina Norahmad, Abass Abdul-Karim, Amirrudin Muhammad, Prem Kumar Muniandy, Jenarun Jelip, Christina Rundi, Mallika Imwong, Rose Nani Mudin and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed, 2 pooled it
8.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 2 syntheses or guidelines pooled it, 88 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  4. Article
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  9. Genotyping and CharacterizingTropical medicine and infectious disease · 2024
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  20. Genetic polymorphism ofAccess microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Mohd Ridzuan Mohd Abd RazakHerbal Medicine Research Center, Institute for Medical Research, Kuala Lumpur, Malaysia.
Umi Rubiah SastuHerbal Medicine Research Center, Institute for Medical Research, Kuala Lumpur, Malaysia.
Nor Azrina NorahmadHerbal Medicine Research Center, Institute for Medical Research, Kuala Lumpur, Malaysia.
Abass Abdul-KarimZonal Public Health Laboratory, Tamale Teaching Hospital, Tamale, Northern Region, Ghana, West Africa.
Amirrudin MuhammadHerbal Medicine Research Center, Institute for Medical Research, Kuala Lumpur, Malaysia.
Prem Kumar MuniandyHerbal Medicine Research Center, Institute for Medical Research, Kuala Lumpur, Malaysia.
Jenarun JelipSabah State Health Department, Rumah Persekutuan, Kota Kinabalu, Sabah, Malaysia.
Christina RundiSabah State Health Department, Rumah Persekutuan, Kota Kinabalu, Sabah, Malaysia.
Mallika ImwongDepartment of Molecular Tropical Medicine and Genetics, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand.
Rose Nani MudinVector Borne Disease Sector, Disease Control Division, Ministry of Health, Federal Government Administrative Centre, Putrajaya, Malaysia.
Noor Rain AbdullahHerbal Medicine Research Center, Institute for Medical Research, Kuala Lumpur, Malaysia.
Institute for Medical Research · MYGovernment of Malaysia · MYMahidol Oxford Tropical Medicine Research Unit · THTamale Teaching Hospital · GH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Malaysia has a national goal to eliminate malaria by 2020. Understanding the genetic diversity of malaria parasites in residual transmission foci can provide invaluable information which may inform the intervention strategies used to reach elimination targets. This study was conducted to determine the genetic diversity level of P. falciparum isolates in malaria residual foci areas of Sabah. Malaria active case detection was conducted in Kalabakan and Kota Marudu. All individuals in the study sites were screened for malaria infection by rapid diagnostic test. Blood from P. falciparum-infected individuals were collected on filter paper prior to DNA extraction. Genotyping was performed using merozoite surface protein-1 (MSP-1), merozoite surface protein-2 (MSP-2), glutamate rich protein (GLURP) and 10 neutral microsatellite loci markers. The size of alleles, multiplicity of infection (MOI), mean number of alleles (Na), expected heterozygosity (He), linkage disequilibrium (LD) and genetic differentiation (FST) were determined. In Kalabakan, the MSP-1 and MSP-2 alleles were predominantly K1 and FC27 family types, respectively. The GLURP genotype VI (751-800 bp) was predominant. The MOI for MSP-1 and MSP-2 were 1.65 and 1.20, respectively. The Na per microsatellite locus was 1.70. The He values for MSP-1, MSP-2, GLURP and neutral microsatellites were 0.17, 0.37, 0.70 and 0.33, respectively. In Kota Marudu, the MSP-1 and MSP-2 alleles were predominantly MAD20 and 3D7 family types, respectively. The GLURP genotype IV (651-700 bp) was predominant. The MOI for both MSP-1 and MSP-2 was 1.05. The Na per microsatellite locus was 3.60. The He values for MSP-1, MSP-2, GLURP and neutral microsatellites were 0.24, 0.25, 0.69 and 0.30, respectively. A significant LD was observed in Kalabakan (0.495, p<0.01) and Kota Marudu P. falciparum populations (0.601, p<0.01). High genetic differentiation between Kalabakan and Kota Marudu P. falciparum populations was observed (FST = 0.532). The genetic data from the present study highlighted the limited diversity and contrasting genetic pattern of P. falciparum populations in the malaria declining areas of Sabah.

Indexed as

Genetic VariationAllelesAntigens, ProtozoanGene FrequencyGenetic LociGenotypeGeographyLinkage DisequilibriumMalaria, FalciparumMalaysiaMerozoite Surface Protein 1Microsatellite RepeatsPhylogenyPlasmodium falciparumPolymorphism, GeneticProtozoan ProteinsAntigens, ProtozoanMerozoite Surface Protein 1merozoite surface protein 2, PlasmodiumProtozoan Proteins

Identifiers

PMID27023787
PMCPMC4811561
OpenAlexW2315311689

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.