Evidence map›Paper›PMID 27023475›Full record

ArticlePloS one2016

Storage Temperature Alters the Expression of Differentiation-Related Genes in Cultured Oral Keratinocytes.

Tor Paaske Utheim, Rakibul Islam, Ida G Fostad, Jon R Eidet, Amer Sehic, Ole K Olstad, Darlene A Dartt, Edward B Messelt, May Griffith, Lara Pasovic

Abstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Tor Paaske UtheimDepartment of Medical Biochemistry, Oslo University Hospital, Oslo, Norway.
Rakibul IslamDepartment of Medical Biochemistry, Oslo University Hospital, Oslo, Norway.
Ida G FostadDepartment of Oral Biology, Faculty of Dentistry, University of Oslo, Oslo, Norway.
Jon R EidetDepartment of Medical Biochemistry, Oslo University Hospital, Oslo, Norway.
Amer SehicDepartment of Oral Biology, Faculty of Dentistry, University of Oslo, Oslo, Norway.
Ole K OlstadDepartment of Medical Biochemistry, Oslo University Hospital, Oslo, Norway.
Darlene A DarttSchepens Eye Research Institute, Massachusetts Eye and Ear, Harvard Medical School, Boston, Massachusetts, United States of America.
Edward B MesseltDepartment of Oral Biology, Faculty of Dentistry, University of Oslo, Oslo, Norway.
May GriffithDepartment of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden.
Lara PasovicDepartment of Medical Biochemistry, Oslo University Hospital, Oslo, Norway.

Funding

Conjunctival Goblet Cell Mucin Secretion in Inflammation and Its ResolutionR01EY019470 · NEI · SCHEPENS EYE RESEARCH INSTITUTE · PI DARTT, DARLENE A · 2009 to 2023
$7.4M
NEI NIH HHS R01 EY019470
6 · The paper itself

Abstract

purposeStorage of cultured human oral keratinocytes (HOK) allows for transportation of cultured transplants to eye clinics worldwide. In a previous study, one-week storage of cultured HOK was found to be superior with regard to viability and morphology at 12°C compared to 4°C and 37°C. To understand more of how storage temperature affects cell phenotype, gene expression of HOK before and after storage at 4°C, 12°C, and 37°C was assessed. MATERIALS AND

methodsCultured HOK were stored in HEPES- and sodium bicarbonate-buffered Minimum Essential Medium at 4°C, 12°C, and 37°C for one week. Total RNA was isolated and the gene expression profile was determined using DNA microarrays and analyzed with Partek Genomics Suite software and Ingenuity Pathway Analysis. Differentially expressed genes (fold change > 1.5 and P < 0.05) were identified by one-way ANOVA. Key genes were validated using qPCR.

resultsGene expression of cultures stored at 4°C and 12°C clustered close to the unstored control cultures. Cultures stored at 37°C displayed substantial change in gene expression compared to the other groups. In comparison with 12°C, 2,981 genes were differentially expressed at 37°C. In contrast, only 67 genes were differentially expressed between the unstored control and the cells stored at 12°C. The 12°C and 37°C culture groups differed most significantly with regard to the expression of differentiation markers. The Hedgehog signaling pathway was significantly downregulated at 37°C compared to 12°C.

conclusionHOK cultures stored at 37°C showed considerably larger changes in gene expression compared to unstored cells than cultured HOK stored at 4°C and 12°C. The changes observed at 37°C consisted of differentiation of the cells towards a squamous epithelium-specific phenotype. Storing cultured ocular surface transplants at 37°C is therefore not recommended. This is particularly interesting as 37°C is the standard incubation temperature used for cell culture.

Indexed as

Gene Expression RegulationPreservation, BiologicalApoptosisBiomarkersCell CommunicationCell DifferentiationCell ProliferationCells, CulturedCluster AnalysisDown-RegulationGene Expression ProfilingHumansKeratinocytesLimbus CorneaeMouthOligonucleotide Array Sequence AnalysisBiomarkers

Identifiers

PMID27023475
PMCPMC4811429

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.