Evidence map›Paper›PMID 27021843›Full record

ArticleJournal of industrial microbiology & biotechnology2016

Proteomic analysis to elucidate degeneration of Clostridium beijerinckii NCIMB 8052 and role of Ca(2+) in strain recovery from degeneration.

Jia Lv, Shengyin Jiao, Renjia Du, Ruijuan Zhang, Yan Zhang, Bei Han

Abstract read
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In one paragraph

Article in Journal of industrial microbiology & biotechnology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Frontiers in microbiology · 2022
    Article
  2. Sporulation in solventogenic and acetogenic clostridia.Applied microbiology and biotechnology · 2021
    Review
  3. Reassessment of the role of CaCOScientific reports · 2020
    Article
  4. Degeneration of industrial bacteria caused by genetic instability.World journal of microbiology & biotechnology · 2020
    Review
  5. Phenotypic and Genomic Analysis ofFrontiers in bioengineering and biotechnology · 2020
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jia LvSchool of Public Health, Health Science Center, Xi'an Jiaotong University, NO. 76 Yanta West Road, P.O. 44, Xi'an, 710061, Shaanxi, China.
Shengyin JiaoSchool of Public Health, Health Science Center, Xi'an Jiaotong University, NO. 76 Yanta West Road, P.O. 44, Xi'an, 710061, Shaanxi, China.
Renjia DuSchool of Public Health, Health Science Center, Xi'an Jiaotong University, NO. 76 Yanta West Road, P.O. 44, Xi'an, 710061, Shaanxi, China.
Ruijuan ZhangSchool of Public Health, Health Science Center, Xi'an Jiaotong University, NO. 76 Yanta West Road, P.O. 44, Xi'an, 710061, Shaanxi, China.
Yan ZhangInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, USA.
Bei HanSchool of Public Health, Health Science Center, Xi'an Jiaotong University, NO. 76 Yanta West Road, P.O. 44, Xi'an, 710061, Shaanxi, China. hanbei@mail.xjtu.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Degeneration of solventogenic Clostridium strains is one of the major barriers in bio-butanol production. A degenerated Clostridium beijerinckii NCIMB 8052 strain (DG-8052) was obtained without any genetic manipulation. Supplementation of CaCO3 to fermentation medium could partially recover metabolism of DG-8052 by more than 50 % increase of cell growth and solvent production. This study investigated the protein expression profile of DG-8052 and its response to CaCO3 treatment. Compared with WT-8052, the lower expressed proteins were responsible for disruption of RNA secondary structures and DNA repair, sporulation, signal transduction, transcription regulation, and membrane transport in DG-8052. Interestingly, accompanied with the decreased glucose utilization and lower solvent production, there was a decreased level of sigma-54 modulation protein which may indicate that the level of sigma-54 activity may be associated with the observed strain degeneration. For the addition of CaCO3, proteomic and biochemical study results revealed that besides buffer capacity, Ca(2+) could stabilize heat shock proteins, increase DNA synthesis and replication, and enhance expression of solventogenic enzymes in DG-8052, which has a similar contribution in WT-8052.

Indexed as

ProteomicsButanolsCalciumCalcium CarbonateClostridium beijerinckiiCulture MediaFermentationIndustrial MicrobiologyTranscriptomeButanolsCalciumCalcium CarbonateCulture MediaCa2+ contributionClostridium beijerinckiiDegenerationProteomic analysisSolvent production

Identifiers

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.