Evidence map›Paper›PMID 27021793›Full record

ArticleScientific reports2016

Genome of Leptomonas pyrrhocoris: a high-quality reference for monoxenous trypanosomatids and new insights into evolution of Leishmania.

Pavel Flegontov, Anzhelika Butenko, Sergei Firsov, Natalya Kraeva, Marek Eliáš, Mark C Field, Dmitry Filatov, Olga Flegontova, Evgeny S Gerasimov, Jana Hlaváčová and 17 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
12.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 110 citations in OpenAlex.

  1. Transcriptomic Analysis of Trypanosomatids.Methods in molecular biology (Clifton, N.J.) · 2026
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  9. Genomes ofPathogens (Basel, Switzerland) · 2023
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  17. Review
  18. Catalase impairsVirulence · 2021
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 10 institutions in 5 countries.

Pavel FlegontovBiology Centre, Institute of Parasitology, Czech Academy of Sciences, 370 05 České Budějovice (Budweis), Czech Republic.
Anzhelika ButenkoLife Science Research Centre, Faculty of Science, University of Ostrava, 710 00 Ostrava, Czech Republic.
Sergei FirsovBiology Centre, Institute of Parasitology, Czech Academy of Sciences, 370 05 České Budějovice (Budweis), Czech Republic.
Natalya KraevaLife Science Research Centre, Faculty of Science, University of Ostrava, 710 00 Ostrava, Czech Republic.
Marek EliášLife Science Research Centre, Faculty of Science, University of Ostrava, 710 00 Ostrava, Czech Republic.
Mark C FieldSchool of Life Sciences, University of Dundee, Dundee, DD1 5EH, UK.
Dmitry FilatovDepartment of Plant Sciences, University of Oxford, Oxford, OX1 3RB, UK.
Olga FlegontovaBiology Centre, Institute of Parasitology, Czech Academy of Sciences, 370 05 České Budějovice (Budweis), Czech Republic.
Evgeny S GerasimovInstitute for Information Transmission Problems, Russian Academy of Sciences, 127051, Moscow, Russia.
Jana HlaváčováDepartment of Parasitology, Faculty of Science, Charles University, 128 44 Prague, Czech Republic.
Aygul IshemgulovaLife Science Research Centre, Faculty of Science, University of Ostrava, 710 00 Ostrava, Czech Republic.
Andrew P JacksonDepartment of Infection Biology, Institute of Infection and Global Health, University of Liverpool, Liverpool, L3 5RF, UK.
Steve KellyDepartment of Plant Sciences, University of Oxford, Oxford, OX1 3RB, UK.
Alexei Y KostygovLife Science Research Centre, Faculty of Science, University of Ostrava, 710 00 Ostrava, Czech Republic.
Maria D LogachevaInstitute for Information Transmission Problems, Russian Academy of Sciences, 127051, Moscow, Russia.
Dmitri A MaslovDepartment of Biology; University of California at Riverside, Riverside, 92521, CA USA.
Fred R Opperdoesde Duve Institute, Université Catholique de Louvain, 1200, Brussels, Belgium.
Amanda O'ReillySchool of Life Sciences, University of Dundee, Dundee, DD1 5EH, UK.
Jovana SádlováDepartment of Parasitology, Faculty of Science, Charles University, 128 44 Prague, Czech Republic.
Tereza ŠevčíkováLife Science Research Centre, Faculty of Science, University of Ostrava, 710 00 Ostrava, Czech Republic.
Divya VenkateshSchool of Life Sciences, University of Dundee, Dundee, DD1 5EH, UK.
Čestmír VlčekInstitute of Molecular Genetics, Czech Academy of Sciences, 142 20 Prague, Czech Republic.
Petr VolfDepartment of Parasitology, Faculty of Science, Charles University, 128 44 Prague, Czech Republic.
Jan VotýpkaBiology Centre, Institute of Parasitology, Czech Academy of Sciences, 370 05 České Budějovice (Budweis), Czech Republic.
Kristína ZáhonováLife Science Research Centre, Faculty of Science, University of Ostrava, 710 00 Ostrava, Czech Republic.
Vyacheslav YurchenkoBiology Centre, Institute of Parasitology, Czech Academy of Sciences, 370 05 České Budějovice (Budweis), Czech Republic.
Julius LukešBiology Centre, Institute of Parasitology, Czech Academy of Sciences, 370 05 České Budějovice (Budweis), Czech Republic.
University of Ostrava · CZCharles University · CZInstitute of Parasitology · CZUniversity of Dundee · GBCzech Academy of Sciences, Biology Centre · CZInstitute for Information Transmission Problems · RUUniversity of Oxford · GBCzech Academy of Sciences, Institute of Molecular Genetics · CZde Duve Institute · BEUniversity of Liverpool · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many high-quality genomes are available for dixenous (two hosts) trypanosomatid species of the genera Trypanosoma, Leishmania, and Phytomonas, but only fragmentary information is available for monoxenous (single-host) trypanosomatids. In trypanosomatids, monoxeny is ancestral to dixeny, thus it is anticipated that the genome sequences of the key monoxenous parasites will be instrumental for both understanding the origin of parasitism and the evolution of dixeny. Here, we present a high-quality genome for Leptomonas pyrrhocoris, which is closely related to the dixenous genus Leishmania. The L. pyrrhocoris genome (30.4 Mbp in 60 scaffolds) encodes 10,148 genes. Using the L. pyrrhocoris genome, we pinpointed genes gained in Leishmania. Among those genes, 20 genes with unknown function had expression patterns in the Leishmania mexicana life cycle suggesting their involvement in virulence. By combining differential expression data for L. mexicana, L. major and Leptomonas seymouri, we have identified several additional proteins potentially involved in virulence, including SpoU methylase and U3 small nucleolar ribonucleoprotein IMP3. The population genetics of L. pyrrhocoris was also addressed by sequencing thirteen strains of different geographic origin, allowing the identification of 1,318 genes under positive selection. This set of genes was significantly enriched in components of the cytoskeleton and the flagellum.

Indexed as

Evolution, MolecularEnergy MetabolismGene Expression ProfilingGene OntologyGenes, ProtozoanGenome, ProtozoanLeishmaniaPhylogenySpecies SpecificityTrypanosomatinaVirulence

Identifiers

PMID27021793
PMCPMC4810370
OpenAlexW2333242766

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.