Evidence map›Paper›PMID 27021210›Full record

ArticleJournal of molecular modeling2016

Impacts of the charged residues mutation S48E/N62H on the thermostability and unfolding behavior of cold shock protein: insights from molecular dynamics simulation with Gō model.

Ji-Guo Su, Xiao-Ming Han, Shu-Xin Zhao, Yan-Xue Hou, Xing-Yuan Li, Li-Sheng Qi, Ji-Hua Wang

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Article in Journal of molecular modeling, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Ji-Guo SuCollege of Science, Yanshan University, Qinhuangdao, 066004, China. jiguosu@ysu.edu.cn.
Xiao-Ming HanCollege of Science, Yanshan University, Qinhuangdao, 066004, China.
Shu-Xin ZhaoCollege of Science, Yanshan University, Qinhuangdao, 066004, China.
Yan-Xue HouCollege of Science, Yanshan University, Qinhuangdao, 066004, China.
Xing-Yuan LiCollege of Science, Yanshan University, Qinhuangdao, 066004, China.
Li-Sheng QiShandong Provincial Key Laboratory of Functional Macromolecular Biophysics, Institute of Biophysics, Dezhou University, Dezhou, 253023, China.
Ji-Hua WangShandong Provincial Key Laboratory of Functional Macromolecular Biophysics, Institute of Biophysics, Dezhou University, Dezhou, 253023, China. jhw25336@126.com.
Yanshan University · CNDezhou University · CNInstitute of Biophysics · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The cold shock protein from the hyperthermophile Thermotoga maritima (Tm-Csp) exhibits significantly higher thermostability than its homologue from the thermophile Bacillus caldolyticus (Bc-Csp). Experimental studies have shown that the electrostatic interactions unique to Tm-Csp are responsible for improving its thermostability. In the present work, the favorable charged residues in Tm-Csp were grafted into Bc-Csp by a double point mutation of S48E/N62H, and the impacts of the mutation on the thermostability and unfolding/folding behavior of Bc-Csp were then investigated by using a modified Gō model, in which the electrostatic interactions between charged residues were considered in the model. Our simulation results show that this Tm-Csp-like charged residue mutation can effectively improve the thermostability of Bc-Csp without changing its two-state folding mechanism. Besides that, we also studied the unfolding kinetics and unfolding/folding pathway of the wild-type Bc-Csp and its mutant. It is found that this charged residue mutation obviously enhanced the stability of the C-terminal region of Bc-Csp, which decreases the unfolding rate and changes the unfolding/folding pathway of the protein. Our studies indicate that the thermostability, unfolding kinetics and unfolding/folding pathway of Bc-Csp can be artificially changed by introducing Tm-Csp-like favorable electrostatic interactions into Bc-Csp.

Indexed as

Amino Acid SubstitutionMolecular Dynamics SimulationMutationAmino Acid SequenceBacillusBacterial ProteinsHeat-Shock ProteinsHydrogen BondingHydrophobic and Hydrophilic InteractionsKineticsProtein DomainsProtein StabilityProtein Structure, SecondaryProtein UnfoldingSpecies SpecificityStatic ElectricityBacterial ProteinsHeat-Shock ProteinsCoarse-grained modelElectrostatic interactionsFolding/unfoldingLangevin dynamics simulationThermophilic protein

Identifiers

PMID27021210
OpenAlexW2320548838

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.