Evidence map›Paper›PMID 27020263›Full record

ArticleJournal of biomedical informatics2016

Optimizing annotation resources for natural language de-identification via a game theoretic framework.

Muqun Li, David Carrell, John Aberdeen, Lynette Hirschman, Jacqueline Kirby, Bo Li, Yevgeniy Vorobeychik, Bradley A Malin

Abstract read
In one paragraph

Article in Journal of biomedical informatics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Scalable Iterative Classification for Sanitizing Large-Scale Datasets.IEEE transactions on knowledge and data engineering · 2017
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Muqun LiDept. of Electrical Engineering & Computer Science, Vanderbilt University, Nashville, TN, United States. Electronic address: muqun.li@vanderbilt.edu.
David CarrellGroup Health Research Institute, Seattle, WA, United States.
John AberdeenThe MITRE Corporation, Bedford, MA, United States.
Lynette HirschmanThe MITRE Corporation, Bedford, MA, United States.
Jacqueline KirbyVanderbilt Institute for Clinical and Translational Research, Vanderbilt University, Nashville, TN, United States.
Bo LiDept. of Electrical Engineering & Computer Science, Vanderbilt University, Nashville, TN, United States.
Yevgeniy VorobeychikDept. of Electrical Engineering & Computer Science, Vanderbilt University, Nashville, TN, United States.
Bradley A MalinDept. of Electrical Engineering & Computer Science, Vanderbilt University, Nashville, TN, United States; Dept. of Biomedical Informatics, Vanderbilt University, Nashville, TN, United States.

Funding

Clinical and Translational Science Coordinating CenterU54TR000123 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BERNARD, GORDON RAPHAEL · 2012 to 2017
$14.2M
eMERGE Coordinating Center - Administrative SupplementU01HG006385 · NHGRI · VANDERBILT UNIVERSITY · PI HARRIS, PAUL A. · 2011 to 2014
$5.4M
Vanderbilt Genome Electronic Records ProjectU01HG006378 · NHGRI · VANDERBILT UNIVERSITY · PI RODEN, DAN M · 2011 to 2014
$4.0M
Technologies to Enable Privacy in Biomedical DatabanksR01LM009989 · NLM · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MALIN, BRADLEY A. · 2009 to 2014
$1.6M
Scalable and Robust Clinical Text De-Identification ToolsR01LM011366 · NLM · KAISER FOUNDATION HEALTH PLAN OF WASHINGTON · PI CARRELL, DAVID S. · 2012 to 2014
$827k
NCATS NIH HHS U54 TR000123NHGRI NIH HHS U01 HG006378NHGRI NIH HHS U01 HG006385NLM NIH HHS R01 LM009989NLM NIH HHS R01 LM011366
6 · The paper itself

Abstract

objectiveElectronic medical records (EMRs) are increasingly repurposed for activities beyond clinical care, such as to support translational research and public policy analysis. To mitigate privacy risks, healthcare organizations (HCOs) aim to remove potentially identifying patient information. A substantial quantity of EMR data is in natural language form and there are concerns that automated tools for detecting identifiers are imperfect and leak information that can be exploited by ill-intentioned data recipients. Thus, HCOs have been encouraged to invest as much effort as possible to find and detect potential identifiers, but such a strategy assumes the recipients are sufficiently incentivized and capable of exploiting leaked identifiers. In practice, such an assumption may not hold true and HCOs may overinvest in de-identification technology. The goal of this study is to design a natural language de-identification framework, rooted in game theory, which enables an HCO to optimize their investments given the expected capabilities of an adversarial recipient.

methodsWe introduce a Stackelberg game to balance risk and utility in natural language de-identification. This game represents a cost-benefit model that enables an HCO with a fixed budget to minimize their investment in the de-identification process. We evaluate this model by assessing the overall payoff to the HCO and the adversary using 2100 clinical notes from Vanderbilt University Medical Center. We simulate several policy alternatives using a range of parameters, including the cost of training a de-identification model and the loss in data utility due to the removal of terms that are not identifiers. In addition, we compare policy options where, when an attacker is fined for misuse, a monetary penalty is paid to the publishing HCO as opposed to a third party (e.g., a federal regulator).

resultsOur results show that when an HCO is forced to exhaust a limited budget (set to $2000 in the study), the precision and recall of the de-identification of the HCO are 0.86 and 0.8, respectively. A game-based approach enables a more refined cost-benefit tradeoff, improving both privacy and utility for the HCO. For example, our investigation shows that it is possible for an HCO to release the data without spending all their budget on de-identification and still deter the attacker, with a precision of 0.77 and a recall of 0.61 for the de-identification. There also exist scenarios in which the model indicates an HCO should not release any data because the risk is too great. In addition, we find that the practice of paying fines back to a HCO (an artifact of suing for breach of contract), as opposed to a third party such as a federal regulator, can induce an elevated level of data sharing risk, where the HCO is incentivized to bait the attacker to elicit compensation.

conclusionsA game theoretic framework can be applied in leading HCO's to optimized decision making in natural language de-identification investments before sharing EMR data.

Indexed as

ConfidentialityElectronic Health RecordsNatural Language ProcessingHumansLanguageRiskElectronic medical recordsGame theoryNatural language processingPrivacy

Identifiers

PMID27020263
PMCPMC4996128

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.