Evidence map›Paper›PMID 27020120›Full record

ArticleScientific reports2016

Microbial oil-degradation under mild hydrostatic pressure (10 MPa): which pathways are impacted in piezosensitive hydrocarbonoclastic bacteria?

Alberto Scoma, Marta Barbato, Emma Hernandez-Sanabria, Francesca Mapelli, Daniele Daffonchio, Sara Borin, Nico Boon

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
7.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 47 citations in OpenAlex.

  1. Environmental Adaptation Strategies of Deep-Sea Fungi.Journal of fungi (Basel, Switzerland) · 2026
    Review
  2. High hydrostatic pressure stimulates n-CCommunications biology · 2025
    Article
  3. Article
  4. The phylogeny and metabolic potentials of anFrontiers in microbiology · 2023
    Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. HydrocarbonoclasticFrontiers in microbiology · 2016
    Article
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Alberto ScomaLaboratory of Microbial Ecology and Technology (LabMET), University of Gent, Coupure Links 653, B 9000 Gent, Belgium.
Marta BarbatoDepartment of Food, Environmental and Nutritional Sciences (DeFENS), University of Milano, Via Celoria 2, 20133, Milano, Italy.
Emma Hernandez-SanabriaLaboratory of Microbial Ecology and Technology (LabMET), University of Gent, Coupure Links 653, B 9000 Gent, Belgium.
Francesca MapelliDepartment of Food, Environmental and Nutritional Sciences (DeFENS), University of Milano, Via Celoria 2, 20133, Milano, Italy.
Daniele DaffonchioKing Abdullah University of Science and Technology (KAUST), Biological and Environmental Sciences and Engineering Division, Thuwal 23955-6900, Kingdom of Saudi Arabia.
Sara BorinDepartment of Food, Environmental and Nutritional Sciences (DeFENS), University of Milano, Via Celoria 2, 20133, Milano, Italy.
Nico BoonLaboratory of Microbial Ecology and Technology (LabMET), University of Gent, Coupure Links 653, B 9000 Gent, Belgium.
University of Milan · ITGhent University · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oil spills represent an overwhelming carbon input to the marine environment that immediately impacts the sea surface ecosystem. Microbial communities degrading the oil fraction that eventually sinks to the seafloor must also deal with hydrostatic pressure, which linearly increases with depth. Piezosensitive hydrocarbonoclastic bacteria are ideal candidates to elucidate impaired pathways following oil spills at low depth. In the present paper, we tested two strains of the ubiquitous Alcanivorax genus, namely A. jadensis KS_339 and A. dieselolei KS_293, which is known to rapidly grow after oil spills. Strains were subjected to atmospheric and mild pressure (0.1, 5 and 10 MPa, corresponding to a depth of 0, 500 and 1000 m, respectively) providing n-dodecane as sole carbon source. Pressures equal to 5 and 10 MPa significantly lowered growth yields of both strains. However, in strain KS_293 grown at 10 MPa CO2 production per cell was not affected, cell integrity was preserved and PO4(3-) uptake increased. Analysis of its transcriptome revealed that 95% of its genes were downregulated. Increased transcription involved protein synthesis, energy generation and respiration pathways. Interplay between these factors may play a key role in shaping the structure of microbial communities developed after oil spills at low depth and limit their bioremediation potential.

Indexed as

Hydrostatic PressurePetroleum PollutionAlcanivoraceaeBacteriaBacterial ProteinsBiodegradation, EnvironmentalEcosystemGene Expression ProfilingGene Expression Regulation, BacterialGeologic SedimentsHydrocarbonsMetabolic Networks and PathwaysPetroleumRibosomal ProteinsRNA, BacterialRNA, TransferBacterial ProteinsHydrocarbonsPetroleumRibosomal ProteinsRNA, BacterialRNA, Transfer

Identifiers

PMID27020120
PMCPMC4810429
OpenAlexW2334542968

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.