Evidence map›Paper›PMID 27019403›Full record

ArticleMolecular plant pathology2017

Deep sequencing leads to the identification of eukaryotic translation initiation factor 5A as a key element in Rsv1-mediated lethal systemic hypersensitive response to Soybean mosaic virus infection in soybean.

Hui Chen, Andrej Adam Arsovski, Kangfu Yu, Aiming Wang

Open access · bronzeAbstract read
In one paragraph

Article in Molecular plant pathology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
8.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 30 citations in OpenAlex.

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  13. Genomics of Plant Disease Resistance in Legumes.Frontiers in plant science · 2019
    Review
  14. Article
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  16. Review
  17. Fine-mapping and identification of a novel locus Rsc15 underlying soybean resistance to Soybean mosaic virus.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017
    Article
  18. Article
  19. The Current Status of the Soybean-Frontiers in microbiology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Hui ChenLondon Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, ON, Canada, N5T 4T3.
Andrej Adam ArsovskiLondon Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, ON, Canada, N5T 4T3.
Kangfu YuGreenhouse and Processing Crops Research Centre, Agriculture and Agri-Food Canada, Harrow, ON, Canada, N0R 1G0.
Aiming WangLondon Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, ON, Canada, N5T 4T3.
Agriculture and Agri-Food Canada · CAWestern University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rsv1, a single dominant resistance locus in soybean, confers extreme resistance to the majority of Soybean mosaic virus (SMV) strains, but is susceptible to the G7 strain. In Rsv1-genotype soybean, G7 infection provokes a lethal systemic hypersensitive response (LSHR), a delayed host defence response. The Rsv1-mediated LSHR signalling pathway remains largely unknown. In this study, we employed a genome-wide investigation to gain an insight into the molecular interplay between SMV G7 and Rsv1-genotype soybean. Small RNA (sRNA), degradome and transcriptome sequencing analyses were used to identify differentially expressed genes (DEGs) and microRNAs (DEMs) in response to G7 infection. A number of DEGs, DEMs and microRNA targets, and the interaction network of DEMs and their target mRNAs responsive to G7 infection, were identified. Knock-down of one of the identified DEGs, the eukaryotic translation initiation factor 5A (eIF5A), diminished the LSHR and enhanced viral accumulation, suggesting the essential role of eIF5A in the G7-induced, Rsv1-mediated LSHR signalling pathway. This work provides an in-depth genome-wide analysis of high-throughput sequencing data, and identifies multiple genes and microRNA signatures that are associated with the Rsv1-mediated LSHR.

Indexed as

Databases, GeneticEukaryotic Translation Initiation Factor 5AGene Expression ProfilingGene Expression Regulation, PlantGene SilencingGenes, PlantGenotypeGlycine maxHigh-Throughput Nucleotide SequencingMicroRNAsPeptide Initiation FactorsPlant DiseasesPlant ProteinsPotyvirusReal-Time Polymerase Chain ReactionReproducibility of ResultsEukaryotic Translation Initiation Factor 5AMicroRNAsPeptide Initiation FactorsPlant ProteinsRNA-Binding Proteinsdegradome-seqeukaryotic translation initiation factorlethal systemic hypersensitive responseSoybean mosaic virussRNA-seqtranscriptome-seqvirus-host interaction

Identifiers

PMID27019403
PMCPMC6638201
OpenAlexW2337883129

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.