Evidence map›Paper›PMID 27019338›Full record

ArticleAIDS research and human retroviruses2016

Immune Activation and HIV-Specific CD8(+) T Cells in Cerebrospinal Fluid of HIV Controllers and Noncontrollers.

Anupama Ganesh, Donna Lemongello, Evelyn Lee, Julia Peterson, Bridget E McLaughlin, April L Ferre, Geraldine M Gillespie, Dietmar Fuchs, Steven G Deeks, Peter W Hunt and 3 more

Abstract read
In one paragraph

Article in AIDS research and human retroviruses, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Role of T Lymphocytes in HIV Neuropathogenesis.Current HIV/AIDS reports · 2019
    Review
  10. Neurological Complications of HIV Infection.Current infectious disease reports · 2017
    Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Anupama Ganesh1 Department of Medical Microbiology and Immunology, University of California , Davis, Davis, California.
Donna Lemongello1 Department of Medical Microbiology and Immunology, University of California , Davis, Davis, California.
Evelyn Lee2 Department of Neurology, San Francisco General Hospital, University of California , San Francisco, San Francisco, California.
Julia Peterson2 Department of Neurology, San Francisco General Hospital, University of California , San Francisco, San Francisco, California.
Bridget E McLaughlin1 Department of Medical Microbiology and Immunology, University of California , Davis, Davis, California.
April L Ferre1 Department of Medical Microbiology and Immunology, University of California , Davis, Davis, California.
Geraldine M Gillespie3 Medical Research Council Human Immunology Unit, Weatherall Institute of Molecular Medicine, John Radcliffe Hospital, University of Oxford , Oxford, United Kingdom .
Dietmar Fuchs4 Division of Biological Chemistry, Innsbruck Medical University , Innsbruck, Austria .
Steven G Deeks5 Department of Medicine, San Francisco General Hospital, University of California , San Francisco, San Francisco, California.
Peter W Hunt5 Department of Medicine, San Francisco General Hospital, University of California , San Francisco, San Francisco, California.
Richard W Price2 Department of Neurology, San Francisco General Hospital, University of California , San Francisco, San Francisco, California.
Serena S Spudich2 Department of Neurology, San Francisco General Hospital, University of California , San Francisco, San Francisco, California.
Barbara L Shacklett1 Department of Medical Microbiology and Immunology, University of California , Davis, Davis, California.
University of California Davis Medical Center · USUniversity of California, San Francisco · USInnsbruck Medical University · ATMedical Research Council · GB

Funding

UCSF CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR024131 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JOHNSTON, S. CLAIBORNE · 2006 to 2011
$111.2M
Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
Engaging University of California Stakeholders for Biorespository ResearchUL1TR000004 · NCATS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GRANDIS, JENNIFER RUBIN · 2012 to 2015
$78.0M
Ujima Mentoring ProgramP30MH062246 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Sheri Ann Lippman · 2001 to 2026
$57.4M
Compartmentalized CSF viral escape and the CNS HIV reservoirR01NS094067 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PRICE, RICHARD W. · 2015 to 2020
$3.9M
Preventing the Establishment of Enfuvirtide-resistance in the Latent ReservoirK24AI069994 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DEEKS, STEVEN GRANT · 2007 to 2016
$1.5M
CNS Immune/Inflammatory Biomarkers in HIV ControllersR21NS069219 · NINDS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI SHACKLETT, BARBARA L. · 2009 to 2010
$422k
EXTRAMURAL RESEARCH FACILITIES CONSTRUCTIONC06RR012088 · NCRR · UNIVERSITY OF CALIFORNIA DAVIS · PI CURRY, FITZ-ROY E · 1996 to 1996
–
Medical Research Council G0501011NCATS NIH HHS UL1 TR000004NCRR NIH HHS C06 RR012088NCRR NIH HHS UL1 RR024131NIAID NIH HHS K24 AI069994NIAID NIH HHS P30 AI027763NIMH NIH HHS P30 MH062246NINDS NIH HHS R01 NS094067
6 · The paper itself

Abstract

The central nervous system (CNS) is an important target of HIV, and cerebrospinal fluid (CSF) can provide a window into host-virus interactions within the CNS. The goal of this study was to determine whether HIV-specific CD8(+) T cells are present in CSF of HIV controllers (HC), who maintain low to undetectable plasma viremia without antiretroviral therapy (ART). CSF and blood were sampled from 11 HC, defined based on plasma viral load (VL) consistently below 2,000 copies/ml without ART. These included nine elite controllers (EC, plasma VL <40 copies/ml) and two viremic controllers (VC, VL 40-2,000 copies/ml). All controllers had CSF VL <40 copies/ml. Three comparison groups were also sampled: six HIV noncontrollers (NC, VL >10,000 copies/ml, no ART); seven individuals with viremia suppressed due to ART (Tx, VL <40 copies/ml); and nine HIV-negative controls. CD4(+) and CD8(+) T cells in CSF and blood were analyzed by flow cytometry to assess expression of CCR5, activation markers CD38 and HLA-DR, and memory/effector markers CD45RA and CCR7. HIV-specific CD8(+) T cells were quantified by major histocompatibility complex class I multimer staining. HIV-specific CD8(+) T cells were detected ex vivo at similar frequencies in CSF of HC and noncontrollers; the highest frequencies were in individuals with CD4 counts below 500 cells/μl. The majority of HIV-specific CD8(+) T cells in CSF were effector memory cells expressing CCR5. Detection of these cells in CSF suggests active surveillance of the CNS compartment by HIV-specific T cells, including in individuals with long-term control of HIV infection in the absence of therapy.

Indexed as

Host-Pathogen InteractionsADP-ribosyl Cyclase 1Anti-HIV AgentsAntiretroviral Therapy, Highly ActiveCD4 Lymphocyte CountCD8-Positive T-LymphocytesDisease ResistanceGene ExpressionHIV-1HIV InfectionsHLA-DR AntigensHumansLeukocyte Common AntigensLymphocyte ActivationReceptors, CCR5Receptors, CCR7ADP-ribosyl Cyclase 1Anti-HIV AgentsCCR5 protein, humanCCR7 protein, humanHLA-DR AntigensLeukocyte Common AntigensReceptors, CCR5Receptors, CCR7RNA, Viral

Identifiers

PMID27019338
PMCPMC4971411
OpenAlexW2346937106

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.