Evidence map›Paper›PMID 27019111›Full record

ArticleNature genetics2016

Transcriptomic and epigenomic characterization of the developing bat wing.

Walter L Eckalbar, Stephen A Schlebusch, Mandy K Mason, Zoe Gill, Ash V Parker, Betty M Booker, Sierra Nishizaki, Christiane Muswamba-Nday, Elizabeth Terhune, Kimberly A Nevonen and 8 more

Open access · hybridAbstract read
In one paragraph

Article in Nature genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
31.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 80 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 2 countries.

Walter L EckalbarDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, California, USA.
Stephen A SchlebuschDepartment of Molecular and Cell Biology, University of Cape Town, Cape Town, South Africa.
Mandy K MasonDepartment of Molecular and Cell Biology, University of Cape Town, Cape Town, South Africa.
Zoe GillDepartment of Molecular and Cell Biology, University of Cape Town, Cape Town, South Africa.
Ash V ParkerDepartment of Molecular and Cell Biology, University of Cape Town, Cape Town, South Africa.
Betty M BookerDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, California, USA.
Sierra NishizakiDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, California, USA.
Christiane Muswamba-NdayDepartment of Molecular and Cell Biology, University of Cape Town, Cape Town, South Africa.
Elizabeth TerhuneOregon National Primate Research Center, Division of Neuroscience, Primate Genetics Section, Beaverton, Oregon, USA.
Kimberly A NevonenOregon National Primate Research Center, Division of Neuroscience, Primate Genetics Section, Beaverton, Oregon, USA.
Nadja MakkiDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, California, USA.
Tara FriedrichInstitute for Human Genetics, University of California, San Francisco, San Francisco, California, USA.
Julia E VanderMeerDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, California, USA.
Katherine S PollardInstitute for Human Genetics, University of California, San Francisco, San Francisco, California, USA.
Lucia CarboneOregon National Primate Research Center, Division of Neuroscience, Primate Genetics Section, Beaverton, Oregon, USA.
Jeff D WallInstitute for Human Genetics, University of California, San Francisco, San Francisco, California, USA.
Nicola IllingDepartment of Molecular and Cell Biology, University of Cape Town, Cape Town, South Africa.
Nadav AhituvDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, California, USA.
University of California, San Francisco · USUniversity of Cape Town · ZAGladstone Institutes · USOregon Health & Science University · USOregon National Primate Research Center · USUniversity of Colorado Boulder · US

Funding

Upgrade of confocal microscopy at the Oregon National Primate Research CenterP51OD011092 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI Bonnie J. Nagel · 2012 to 2026
$203.9M
STRUCTURAL BIOLOGY TRAINING PROGRAMT32GM008284 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KORTEMME, TANJA · 1988 to 2022
$10.1M
BMI Bioinformatics Training GrantsT32GM067547 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HERNANDEZ, RYAN D. · 2003 to 2022
$6.6M
Characterization of regulatory elements leading to human limb malformationsR01HD059862 · NICHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AHITUV, NADAV, BEJERANO, GILL · 2009 to 2013
$2.2M
Integrative interpretation of the organismal consequences of non-coding variationR01CA197139 · NCI · UNIVERSITY OF WASHINGTON · PI COOPER, GREGORY MICHAEL, SHENDURE, JAY ASHOK · 2015 to 2017
$1.9M
Identification & functional characterization of SIM1 obesity-associated variantsR01DK090382 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AHITUV, NADAV, VAISSE, CHRISTIAN · 2012 to 2015
$1.3M
Characterization of neuronal gene regulatory elements associated with epilepsyR01NS079231 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AHITUV, NADAV · 2012 to 2015
$1.2M
High Performance Computer for Computational BiosciencesS10OD021596 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SALI, ANDREJ · 2016 to 2016
$443k
NCI NIH HHS R01 CA197139NICHD NIH HHS R01 HD059862NIDDK NIH HHS R01 DK090382NIGMS NIH HHS T32 GM008284NIGMS NIH HHS T32 GM067547NIH HHS P51 OD011092NIH HHS S10 OD021596NINDS NIH HHS R01 NS079231
6 · The paper itself

Abstract

Bats are the only mammals capable of powered flight, but little is known about the genetic determinants that shape their wings. Here we generated a genome for Miniopterus natalensis and performed RNA-seq and ChIP-seq (H3K27ac and H3K27me3) analyses on its developing forelimb and hindlimb autopods at sequential embryonic stages to decipher the molecular events that underlie bat wing development. Over 7,000 genes and several long noncoding RNAs, including Tbx5-as1 and Hottip, were differentially expressed between forelimb and hindlimb, and across different stages. ChIP-seq analysis identified thousands of regions that are differentially modified in forelimb and hindlimb. Comparative genomics found 2,796 bat-accelerated regions within H3K27ac peaks, several of which cluster near limb-associated genes. Pathway analyses highlighted multiple ribosomal proteins and known limb patterning signaling pathways as differentially regulated and implicated increased forelimb mesenchymal condensation in differential growth. In combination, our work outlines multiple genetic components that likely contribute to bat wing formation, providing insights into this morphological innovation.

Indexed as

Epigenesis, GeneticTranscriptomeAnimalsChiropteraEmbryonic DevelopmentGene Expression ProfilingGenomeMaleRegulatory Sequences, Nucleic AcidRNA, Long NoncodingSequence Analysis, RNAWings, AnimalRNA, Long Noncoding

Identifiers

PMID27019111
PMCPMC4848140
OpenAlexW2320106101

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.