Evidence map›Paper›PMID 27019095›Full record

ArticlePloS one2016

Molecular and Phenotypic Characterization of a Highly Evolved Type 2 Vaccine-Derived Poliovirus Isolated from Seawater in Brazil, 2014.

Klécia Marília S de Melo Cassemiro, Fernanda M Burlandy, Mikaela R F Barbosa, Qi Chen, Jaume Jorba, Elayse M Hachich, Maria I Z Sato, Cara C Burns, Edson E da Silva

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 27 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. A Review of the Most Commonly Used Methods for Sample Collection in Environmental Surveillance of Poliovirus.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2018
    Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Klécia Marília S de Melo CassemiroEnterovirus Laboratory, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Rio de Janeiro, Rio de Janeiro, Brazil.
Fernanda M BurlandyEnterovirus Laboratory, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Rio de Janeiro, Rio de Janeiro, Brazil.
Mikaela R F BarbosaEnvironmental Analysis Department, Environmental Company of São Paulo State, São Paulo, São Paulo, Brazil.
Qi ChenDivision of Viral Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of Americaa.
Jaume JorbaDivision of Viral Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of Americaa.
Elayse M HachichEnvironmental Analysis Department, Environmental Company of São Paulo State, São Paulo, São Paulo, Brazil.
Maria I Z SatoEnvironmental Analysis Department, Environmental Company of São Paulo State, São Paulo, São Paulo, Brazil.
Cara C BurnsDivision of Viral Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of Americaa.
Edson E da SilvaEnterovirus Laboratory, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Rio de Janeiro, Rio de Janeiro, Brazil.
Centers for Disease Control and Prevention · USFundação Oswaldo Cruz · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A type 2 vaccine-derived poliovirus (VDPV), differing from the Sabin 2 strain at 8.6% (78/903) of VP1 nucleotide positions, was isolated from seawater collected from a seaport in São Paulo State, Brazil. The P1/capsid region is related to the Sabin 2 strain, but sequences within the 5'-untranslated region and downstream of the P1 region were derived from recombination with other members of Human Enterovirus Species C (HEV-C). The two known attenuating mutations had reverted to wild-type (A481G in the 5'-UTR and Ile143Thr in VP1). The VDPV isolate had lost the temperature sensitive phenotype and had accumulated amino acid substitutions in neutralizing antigenic (NAg) sites 3a and 3b. The date of the initiating OPV dose, estimated from the number of synonymous substitutions in the capsid region, was approximately 8.5 years before seawater sampling, a finding consistent with a long time of virus replication and possible transmission among several individuals. Although no closely related type 2 VDPVs were detected in Brazil or elsewhere, this VDPV was found in an area with a mobile population, where conditions may favor both viral infection and spread. Environmental surveillance serves as an important tool for sensitive and early detection of circulating poliovirus in the final stages of global polio eradication.

Indexed as

5' Untranslated RegionsAmino Acid SequenceAmino Acid SubstitutionAntibodies, ViralBrazilCapsid ProteinsCell LineHumansMolecular Sequence DataPhenotypePhylogenyPoliovirusPromoter Regions, GeneticReal-Time Polymerase Chain ReactionRecombination, GeneticSeawater5' Untranslated RegionsAntibodies, ViralCapsid Proteins

Identifiers

PMID27019095
PMCPMC4809597
OpenAlexW2333636975

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.