Evidence map›Paper›PMID 27018598›Full record

ArticlePloS one2016

Crystal Structure of Human Myotubularin-Related Protein 1 Provides Insight into the Structural Basis of Substrate Specificity.

Seoung Min Bong, Kka-bi Son, Seung-Won Yang, Jae-Won Park, Jea-Won Cho, Kyung-Tae Kim, Hackyoung Kim, Seung Jun Kim, Young Jun Kim, Byung Il Lee

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Seoung Min BongResearch institute, National Cancer Center, Goyang, Gyeonggi 10408, Republic of Korea.
Kka-bi SonDepartment of Biomedical Chemistry, Konkuk University, Chungju 27478, Republic of Korea.
Seung-Won YangResearch institute, National Cancer Center, Goyang, Gyeonggi 10408, Republic of Korea.
Jae-Won ParkResearch institute, National Cancer Center, Goyang, Gyeonggi 10408, Republic of Korea.
Jea-Won ChoResearch institute, National Cancer Center, Goyang, Gyeonggi 10408, Republic of Korea.
Kyung-Tae KimResearch institute, National Cancer Center, Goyang, Gyeonggi 10408, Republic of Korea.
Hackyoung KimDepartment of Biomedical Chemistry, Konkuk University, Chungju 27478, Republic of Korea.
Seung Jun KimMedical Proteomics Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 34141, Republic of Korea.
Young Jun KimDepartment of Biomedical Chemistry, Konkuk University, Chungju 27478, Republic of Korea.
Byung Il LeeResearch institute, National Cancer Center, Goyang, Gyeonggi 10408, Republic of Korea.
National Cancer Center · KRKonkuk University · KRKorea Research Institute of Bioscience and Biotechnology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Myotubularin-related protein 1 (MTMR1) is a phosphatase that belongs to the tyrosine/dual-specificity phosphatase superfamily. MTMR1 has been shown to use phosphatidylinositol 3-monophosphate (PI(3)P) and/or phosphatidylinositol 3,5-bisphosphate (PI(3,5)P2) as substrates. Here, we determined the crystal structure of human MTMR1. The refined model consists of the Pleckstrin homology (PH)-GRAM and phosphatase (PTP) domains. The overall structure was highly similar to the previously reported MTMR2 structure. Interestingly, two phosphate molecules were coordinated by strictly conserved residues located in the C(X)5R motif of the active site. Additionally, our biochemical studies confirmed the substrate specificity of MTMR1 for PI(3)P and PI(3,5)P2 over other phosphatidylinositol phosphates. Our structural and enzymatic analyses provide insight into the catalytic mechanism and biochemical properties of MTMR1.

Indexed as

Amino Acid SequenceCatalytic DomainCrystallography, X-RayHumansMolecular Sequence DataPhosphatidylinositol PhosphatesProtein Structure, TertiaryProtein Tyrosine Phosphatases, Non-ReceptorRecombinant ProteinsSequence AlignmentSubstrate SpecificityMTMR1 protein, humanphosphatidylinositol 3,5-diphosphatephosphatidylinositol 3-phosphatePhosphatidylinositol PhosphatesProtein Tyrosine Phosphatases, Non-ReceptorRecombinant Proteins

Identifiers

PMID27018598
PMCPMC4809516
OpenAlexW2330653202

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.