Evidence map›Paper›PMID 27016237›Full record

ArticleVirology journal2016

Molecular characterization of Nipah virus from Pteropus hypomelanus in Southern Thailand.

Supaporn Wacharapluesadee, Panumas Samseeneam, Mana Phermpool, Thongchai Kaewpom, Apaporn Rodpan, Pattarapol Maneeorn, Phimchanok Srongmongkol, Budsabong Kanchanasaka, Thiravat Hemachudha

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 37 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. The genetic diversity of Nipah virus across spatial scales.medRxiv : the preprint server for health sciences · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Emergence and adaptive evolution of Nipah virus.Transboundary and emerging diseases · 2020
    Article
  17. Review
  18. Ecology and evolution · 2019
    Article
  19. Rapid and Specific Detection of All KnownFrontiers in microbiology · 2019
    Article
  20. Enhancing preparation for large Nipah outbreaks beyond Bangladesh: Preventing a tragedy like Ebola in West Africa.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Supaporn WacharapluesadeeWorld Health Organization Collaborating Centre for Research and Training on Viral Zoonoses, King Chulalongkorn Memorial Hospital, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand. spwa@hotmail.com.
Panumas SamseeneamDepartment of National Parks, Wildlife and Plant Conservation, Bangkok, Thailand.
Mana PhermpoolDepartment of National Parks, Wildlife and Plant Conservation, Bangkok, Thailand.
Thongchai KaewpomWorld Health Organization Collaborating Centre for Research and Training on Viral Zoonoses, King Chulalongkorn Memorial Hospital, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand.
Apaporn RodpanWorld Health Organization Collaborating Centre for Research and Training on Viral Zoonoses, King Chulalongkorn Memorial Hospital, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand.
Pattarapol ManeeornDepartment of National Parks, Wildlife and Plant Conservation, Bangkok, Thailand.
Phimchanok SrongmongkolDepartment of National Parks, Wildlife and Plant Conservation, Bangkok, Thailand.
Budsabong KanchanasakaDepartment of National Parks, Wildlife and Plant Conservation, Bangkok, Thailand.
Thiravat HemachudhaWorld Health Organization Collaborating Centre for Research and Training on Viral Zoonoses, King Chulalongkorn Memorial Hospital, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand.
Department of National Parks Wildlife and Plant Conservation · THKing Chulalongkorn Memorial Hospital · THChulalongkorn University · TH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundNipah virus (NiV) first emerged in Malaysia in 1998, with two bat species (Pteropus hypomelanus and P. vampyrus) as the putative natural reservoirs. In 2002, NiV IgG antibodies were detected in these species from Thailand, but viral RNA could not be detected for strain characterization. Two strains of NiV (Malaysia and Bangladesh) have been found in P. lylei in central Thailand, although Bangladesh strain, the causative strain for the outbreak in Bangladesh since 2001, was dominant. To understand the diversity of NiV in Thailand, this study identified NiV strain, using molecular characterizations, from P. hypomelanus in southern Thailand.

findingsPooled bat urine specimens were collected from plastic sheet underneath bat roosts in April 2010, and then monthly from December 2010 to May 2011 at an island in southern Thailand. Five in 184 specimens were positive for NiV, using duplex nested RT-PCR assay on partial nucleocapsid fragment (357 bp). Whole sequences of nucleocapsid gene from four bats were characterized. All 5 partial fragments and 4 whole nucleocapsid genes formed a monophyletic with NiV-MY.

conclusionsOur study showed that P. hypomelanus in southern Thailand and from Malaysia, a bordering country, harbored similar NiV. This finding indicates that NiV is not limited to central Thailand or P. lylei species, and it may be a source of inter-species transmission. This indicates a higher potential for a widespread NiV outbreak in Thailand. NiV surveillance in Pteropus bats, the major natural reservoirs, should be conducted continuously in countries or regions with high susceptibility to outbreaks.

Indexed as

Genetic VariationAnimalsChiropteraNipah VirusNucleocapsidPhylogenyPolymerase Chain ReactionRNA, ViralSequence Analysis, DNAThailandUrineRNA, ViralBatsNipah virusSouthernStrainThailandTransmission

Identifiers

PMID27016237
PMCPMC4807597
OpenAlexW2308024101

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.