Evidence map›Paper›PMID 27016195›Full record

ArticleExtremophiles : life under extreme conditions2016

Analysis of the complete genome sequence of the archaeon Pyrococcus chitonophagus DSM 10152 (formerly Thermococcus chitonophagus).

Konstantinos Papadimitriou, Panagiotis K Baharidis, Anastasios Georgoulis, Marion Engel, Maria Louka, Georgia Karamolegkou, Aggeliki Tsoka, Jochen Blom, Bruno Pot, Piotr Malecki and 4 more

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In one paragraph

Article in Extremophiles : life under extreme conditions, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Structural, Thermodynamic and Enzymatic Characterization ofInternational journal of molecular sciences · 2022
    Article
  3. Metabolic Adaptation to Sulfur of HyperthermophilicInternational journal of molecular sciences · 2020
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 4 countries.

Konstantinos PapadimitriouDepartment of Food Science and Human Nutrition, Agricultural University of Athens, Iera Odos 75, 11855, Athens, Greece.
Panagiotis K BaharidisDepartment of Food Science and Human Nutrition, Agricultural University of Athens, Iera Odos 75, 11855, Athens, Greece.
Anastasios GeorgoulisDepartment of Biochemistry and Molecular Biology, National and Kapodistrian University of Athens, Panepistimiopolis Zografou, 15701, Athens, Greece.
Marion EngelResearch Unit for Environmental Genomics, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt (GmbH), Ingolstädter Landstr. 1, 85764, Neuherberg, Germany.
Maria LoukaDepartment of Biochemistry and Molecular Biology, National and Kapodistrian University of Athens, Panepistimiopolis Zografou, 15701, Athens, Greece.
Georgia KaramolegkouDepartment of Biochemistry and Molecular Biology, National and Kapodistrian University of Athens, Panepistimiopolis Zografou, 15701, Athens, Greece.
Aggeliki TsokaDepartment of Biochemistry and Molecular Biology, National and Kapodistrian University of Athens, Panepistimiopolis Zografou, 15701, Athens, Greece.
Jochen BlomBioinformatics and Systems Biology, Justus Liebig University, Giessen, Germany.
Bruno PotInstitut Pasteur de Lille, U1019, UMR 8204, CIIL, Centre d'Infection et d'Immunité de Lille, Univ. Lille, CNRS, Inserm, CHU Lille, 59000, Lille, France.
Piotr MaleckiInstitute of Bioorganic Chemistry, Polish Academy of Sciences, Noskowskiego 12/14, Poznan, 61-704, Poland.
Wojciech RypniewskiInstitute of Bioorganic Chemistry, Polish Academy of Sciences, Noskowskiego 12/14, Poznan, 61-704, Poland.
Harald HuberLehrstuhl für Mikrobiologie und Archäenzentrum Universität Regensburg, Universitätsstrasse 31, 93053, Regensburg, Germany.
Michael SchloterResearch Unit for Environmental Genomics, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt (GmbH), Ingolstädter Landstr. 1, 85764, Neuherberg, Germany.
Constantinos VorgiasDepartment of Biochemistry and Molecular Biology, National and Kapodistrian University of Athens, Panepistimiopolis Zografou, 15701, Athens, Greece. cvorgias@biol.uoa.gr.
National and Kapodistrian University of Athens · GRAgricultural University of Athens · GRHelmholtz Zentrum München · DEInstitute of Bioorganic Chemistry, Polish Academy of Sciences · PLUniversité de Lille · FRUniversity of Giessen · DEUniversity of Regensburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Here we analyze the first complete genome sequence of Pyrococcus chitonophagus. The archaeon was previously suggested to belong to the Thermococcus rather than the Pyrococcus genus. Whole genome phylogeny as well as whole proteome comparisons using all available complete genomes in Thermococcales clearly showed that the species belongs to the Pyrococcus genus. P. chitonophagus was originally isolated from a hydrothermal vent site and it has been described to effectively degrade chitin debris, and therefore is considered to play a major role in the sea water ecology and metabolic activity of microbial consortia within hot sea water ecosystems. Indeed, an obvious feature of the P. chitonophagus genome is that it carries proteins showing complementary activities for chitin degradation, i.e. endo- and exo-chitinase, diacetylchitobiose deacetylase and exo-β-D glucosaminidase activities. This finding supports the hypothesis that compared to other Thermococcales species P. chitonophagus is adapted to chitin degradation.

Indexed as

Genome, ArchaealChitinPhylogenyPyrococcusThermococcusChitinChitinolytic activityGenome analysisHyperthermophilic archeonPyrococcus chitonophagus

Identifiers

PMID27016195
OpenAlexW2461955027

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.