Evidence map›Paper›PMID 27016194›Full record

ArticleExtremophiles : life under extreme conditions2016

Biochemical characterization and structural analysis of a new cold-active and salt-tolerant esterase from the marine bacterium Thalassospira sp.

Concetta De Santi, Hanna-Kirsti S Leiros, Alessia Di Scala, Donatella de Pascale, Bjørn Altermark, Nils-Peder Willassen

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Article in Extremophiles : life under extreme conditions, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

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  7. Regulated strategies of cold-adapted microorganisms in response to cold: a review.Environmental science and pollution research international · 2021
    Review
  8. Structure andOpen biology · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Concetta De SantiInstitute of Protein Biochemistry, National Research Council, Via P. Castellino, 111., 80131, Naples, Italy. concetta.d.santi@uit.no.ORCID http://orcid.org/0000-0001-9823-6019
Hanna-Kirsti S LeirosNorStruct, Department of Chemistry, Faculty of Science and Technology, UiT The Arctic University of Norway, 9037, Tromsø, Norway.
Alessia Di ScalaInstitute of Protein Biochemistry, National Research Council, Via P. Castellino, 111., 80131, Naples, Italy.
Donatella de PascaleInstitute of Protein Biochemistry, National Research Council, Via P. Castellino, 111., 80131, Naples, Italy.
Bjørn AltermarkNorStruct, Department of Chemistry, Faculty of Science and Technology, UiT The Arctic University of Norway, 9037, Tromsø, Norway.
Nils-Peder WillassenNorStruct, Department of Chemistry, Faculty of Science and Technology, UiT The Arctic University of Norway, 9037, Tromsø, Norway.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A gene encoding an esterase, ThaEst2349, was identified in the marine psychrophilic bacterium Thalassospira sp. GB04J01. The gene was cloned and overexpressed in E. coli as a His-tagged fusion protein. The recombinant enzyme showed optimal activity at 45 °C and the thermal stability displayed a retention of 75 % relative activity at 40 °C after 2 h. The optimal pH was 8.5 but the enzyme kept more than 75 % of its maximal activity between pH 8.0 and 9.5. ThaEst2349 also showed remarkable tolerance towards high concentrations of salt and it was active against short-chain p-nitrophenyl esters, displaying optimal activity with the acetate. The enzyme was tested for tolerance of organic solvents and the results are suggesting that it could function as an interesting candidate for biotechnological applications. The crystal structure of ThaEst2349 was determined to 1.69 Å revealing an asymmetric unit containing two chains, which also is the biological unit. The structure has a characteristic cap domain and a catalytic triad comprising Ser158, His285 and Asp255. To explain the cold-active nature of the enzyme, we compared it against thermophilic counterparts. Our hypothesis is that a high methionine content, less hydrogen bonds and less ion pairs render the enzyme more flexible at low temperatures.

Indexed as

Cold TemperatureSalt ToleranceBacterial ProteinsCatalytic DomainEsterasesRhodospirillaceaeBacterial ProteinsEsterasesBiotechnological applicationsCold-activeCold adaptedCrystal structureEsterase

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.