Evidence map›Paper›PMID 27016024›Full record

ArticleMolecular biology and evolution2016

Independent and Parallel Evolution of New Genes by Gene Duplication in Two Origins of C4 Photosynthesis Provides New Insight into the Mechanism of Phloem Loading in C4 Species.

David M Emms, Sarah Covshoff, Julian M Hibberd, Steven Kelly

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Article in Molecular biology and evolution, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 96 citations in OpenAlex.

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  4. Investigating theProceedings of the National Academy of Sciences of the United States of America · 2024
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  8. Investigating thebioRxiv : the preprint server for biology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

David M EmmsDepartment of Plant Sciences, University of Oxford, Oxford, United Kingdom.
Sarah CovshoffDepartment of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.
Julian M HibberdDepartment of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.
Steven KellyDepartment of Plant Sciences, University of Oxford, Oxford, United Kingdom steven.kelly@plants.ox.ac.uk.
University of Cambridge · GBUniversity of Oxford · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

unlabelledC4 photosynthesis is considered one of the most remarkable examples of evolutionary convergence in eukaryotes. However, it is unknown whether the evolution of C4 photosynthesis required the evolution of new genes. Genome-wide gene-tree species-tree reconciliation of seven monocot species that span two origins of C4 photosynthesis revealed that there was significant parallelism in the duplication and retention of genes coincident with the evolution of C4 photosynthesis in these lineages. Specifically, 21 orthologous genes were duplicated and retained independently in parallel at both C4 origins. Analysis of this gene cohort revealed that the set of parallel duplicated and retained genes is enriched for genes that are preferentially expressed in bundle sheath cells, the cell type in which photosynthesis was activated during C4 evolution. Furthermore, functional analysis of the cohort of parallel duplicated genes identified SWEET-13 as a potential key transporter in the evolution of C4 photosynthesis in grasses, and provides new insight into the mechanism of phloem loading in these C4 species. KEY WORDS: C4 photosynthesis, gene duplication, gene families, parallel evolution.

Indexed as

Gene DuplicationBiological EvolutionBiological TransportComputational BiologyDatabases, ProteinEvolution, MolecularPhloemPhotosynthesisPhylogenyPoaceaeSorghumTranscription FactorsTranscriptomeTranscription Factors

Identifiers

PMID27016024
PMCPMC4915358
OpenAlexW2308689933

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.