Evidence map›Paper›PMID 27015792›Full record

ArticleJournal of neuroscience methods2016

Multivariate dynamical systems-based estimation of causal brain interactions in fMRI: Group-level validation using benchmark data, neurophysiological models and human connectome project data.

Srikanth Ryali, Tianwen Chen, Kaustubh Supekar, Tao Tu, John Kochalka, Weidong Cai, Vinod Menon

Abstract readValidation Study
In one paragraph

Article in Journal of neuroscience methods, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
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  6. The role of PFC networks in cognitive control and executive function.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2022
    Review
  7. Article
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  9. Article
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  12. Network Configurations in the Human Brain Reflect Choice Bias during Rapid Face Processing.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2017
    Article
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  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Srikanth RyaliDepartment of Psychiatry & Behavioral Sciences, Stanford University School of Medicine, Stanford, CA 94305, United States. Electronic address: sryali@stanford.edu.
Tianwen ChenDepartment of Psychiatry & Behavioral Sciences, Stanford University School of Medicine, Stanford, CA 94305, United States.
Kaustubh SupekarDepartment of Psychiatry & Behavioral Sciences, Stanford University School of Medicine, Stanford, CA 94305, United States.
Tao TuDepartment of Psychiatry & Behavioral Sciences, Stanford University School of Medicine, Stanford, CA 94305, United States.
John KochalkaDepartment of Psychiatry & Behavioral Sciences, Stanford University School of Medicine, Stanford, CA 94305, United States.
Weidong CaiDepartment of Psychiatry & Behavioral Sciences, Stanford University School of Medicine, Stanford, CA 94305, United States.
Vinod MenonDepartment of Psychiatry & Behavioral Sciences, Stanford University School of Medicine, Stanford, CA 94305, United States; Department of Neurology & Neurological Sciences, Stanford University School of Medicine, Stanford, CA 94305, United States; Stanford Neurosciences Institute, Stanford University School of Medicine, Stanford, CA 94305, United States. Electronic address: menon@stanford.edu.

Funding

Methods for Dynamic Causal Interactions in Human Brain Function and DysfunctionR01NS086085 · NINDS · STANFORD UNIVERSITY · PI MENON, VINOD · 2014 to 2025
$3.9M
Methods for Dynamic Causal Interactions in the Developing Human BrainK25HD074652 · NICHD · STANFORD UNIVERSITY · PI RYALI, SRIKANTH · 2013 to 2019
$663k
Multivariate Dynamical Systems Methods for Identifying Causal Interactions in fMRR21NS071221 · NINDS · STANFORD UNIVERSITY · PI MENON, VINOD · 2011 to 2012
$435k
NICHD NIH HHS K25 HD074652NINDS NIH HHS R01 NS086085NINDS NIH HHS R21 NS071221
6 · The paper itself

Abstract

backgroundCausal estimation methods are increasingly being used to investigate functional brain networks in fMRI, but there are continuing concerns about the validity of these methods. NEW

methodMultivariate dynamical systems (MDS) is a state-space method for estimating dynamic causal interactions in fMRI data. Here we validate MDS using benchmark simulations as well as simulations from a more realistic stochastic neurophysiological model. Finally, we applied MDS to investigate dynamic casual interactions in a fronto-cingulate-parietal control network using human connectome project (HCP) data acquired during performance of a working memory task. Crucially, since the ground truth in experimental data is unknown, we conducted novel stability analysis to determine robust causal interactions within this network.

resultsMDS accurately recovered dynamic causal interactions with an area under receiver operating characteristic (AUC) above 0.7 for benchmark datasets and AUC above 0.9 for datasets generated using the neurophysiological model. In experimental fMRI data, bootstrap procedures revealed a stable pattern of causal influences from the anterior insula to other nodes of the fronto-cingulate-parietal network. COMPARISON WITH EXISTING

methodsMDS is effective in estimating dynamic causal interactions in both the benchmark and neurophysiological model based datasets in terms of AUC, sensitivity and false positive rates.

conclusionsOur findings demonstrate that MDS can accurately estimate causal interactions in fMRI data. Neurophysiological models and stability analysis provide a general framework for validating computational methods designed to estimate causal interactions in fMRI. The right anterior insula functions as a causal hub during working memory.

Indexed as

AdultArea Under CurveBenchmarkingBrainBrain MappingCerebrovascular CirculationComputer SimulationFemaleHumansMagnetic Resonance ImagingMaleMemory, Short-TermModels, NeurologicalMultivariate AnalysisNeural PathwaysNeuropsychological TestsOxygenBOLD fMRICausalityDCMGCA

Identifiers

PMID27015792
PMCPMC4903892

What OpenQuestion holds

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LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.