Evidence map›Paper›PMID 27014636›Full record

ArticleFrontiers in cellular and infection microbiology2016

A Novel Small RNA Regulates Tolerance and Virulence in Shigella flexneri by Responding to Acidic Environmental Changes.

Ligui Wang, Guang Yang, Lihua Qi, Xiang Li, Leili Jia, Jing Xie, Shaofu Qiu, Peng Li, RongZhang Hao, Zhihao Wu and 3 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. A Novel sRNA inFrontiers in cellular and infection microbiology · 2020
    Article
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Ligui WangInstitute of Disease Control and Prevention, Academy of Military Medical SciencesBeijing, China; Center of Computational Biology, Beijing Institute of Basic Medical SciencesBeijing, China.
Guang YangInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Lihua QiInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Xiang LiInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Leili JiaInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Jing XieInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Shaofu QiuInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Peng LiInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
RongZhang HaoInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Zhihao WuInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Xinying DuInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Wuju LiCenter of Computational Biology, Beijing Institute of Basic Medical Sciences Beijing, China.
Hongbin SongInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Academy of Military Medical Sciences · CNInstitute of Basic Medical Sciences of the Chinese Academy of Medical Sciences

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Shigella flexneri is an important cause of bacillary dysentery in developing countries. Small regulatory RNAs (sRNAs) play essential roles in diverse cellular processes. We found a novel sRNA Ssr1 based on RT-PCR, northern blot, and 5'RACE in S. flexneri. Ssr1 responds to acidic environmental changes, as shown by a strong linear correlation between the pH value and Ssr1 expression (R = 0.785, P < 0.05) using the qRT-PCR method. Deletion of Ssr1 results in growth retardation at pH values ranging from 5.0 to 7.0 (P < 0.05), and the survival rate was reduced by 22% in acidic conditions (pH 3.0). Additionally, virulence was significantly increased in an Ssr1 mutant strain, as revealed in a murine lung invasion model and survival model assays. By using the sTarPicker method and proteomic analysis, we considered that DnaK, which is a major factor that confers acidic stress tolerance, may be a direct target of Ssr1. We also found that Ssr1 may enhance virulence by directly targeting OmpA; this leads to altered expression of genes in the type three secretion system (T3SS). This work provides new insight into the mechanism of adaptation to environmental stress and into the pathogenesis of Shigella.

Indexed as

Adaptation, PhysiologicalAnimalsBacterial Outer Membrane ProteinsDysentery, BacillaryFemaleGene Expression Regulation, BacterialHydrogen-Ion ConcentrationMiceMice, Inbred BALB CRNA, BacterialRNA, Small UntranslatedShigella flexneriTranscription, GeneticType III Secretion SystemsVirulence FactorsBacterial Outer Membrane ProteinsOMPA outer membrane proteinsRNA, BacterialRNA, Small UntranslatedType III Secretion SystemsVirulence FactorsresponseShigella flexnerisRNAstress tolerancevirulence

Identifiers

PMID27014636
PMCPMC4782007
OpenAlexW2303530292

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.