Evidence map›Paper›PMID 27014315›Full record

ArticleFrontiers in plant science2016

Synthesis of Chlorophyll-Binding Proteins in a Fully Segregated Δycf54 Strain of the Cyanobacterium Synechocystis PCC 6803.

Sarah Hollingshead, Jana Kopečná, David R Armstrong, Lenka Bučinská, Philip J Jackson, Guangyu E Chen, Mark J Dickman, Michael P Williamson, Roman Sobotka, C Neil Hunter

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
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  7. International journal of molecular sciences · 2023
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  8. Article
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  12. Evolution of Ycf54-independent chlorophyll biosynthesis in cyanobacteria.Proceedings of the National Academy of Sciences of the United States of America · 2021
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  18. Three classes of oxygen-dependent cyclase involved in chlorophyll and bacteriochlorophyll biosynthesis.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Sarah HollingsheadDepartment of Molecular Biology and Biotechnology, University of SheffieldSheffield, UK; Sir William Dunn School of Pathology, University of OxfordOxford, UK.
Jana KopečnáInstitute of Microbiology, Centre Algatech, Academy of Sciences of the Czech Republic Třeboň, Czech Republic.
David R ArmstrongDepartment of Molecular Biology and Biotechnology, University of Sheffield Sheffield, UK.
Lenka BučinskáInstitute of Microbiology, Centre Algatech, Academy of Sciences of the Czech RepublicTřeboň, Czech Republic; Faculty of Science, University of South BohemiaČeské Budějovice, Czech Republic.
Philip J JacksonDepartment of Molecular Biology and Biotechnology, University of SheffieldSheffield, UK; ChELSI Institute, Department of Chemical and Biological Engineering, University of SheffieldSheffield, UK.
Guangyu E ChenDepartment of Molecular Biology and Biotechnology, University of Sheffield Sheffield, UK.
Mark J DickmanChELSI Institute, Department of Chemical and Biological Engineering, University of Sheffield Sheffield, UK.
Michael P WilliamsonDepartment of Molecular Biology and Biotechnology, University of Sheffield Sheffield, UK.
Roman SobotkaInstitute of Microbiology, Centre Algatech, Academy of Sciences of the Czech RepublicTřeboň, Czech Republic; Faculty of Science, University of South BohemiaČeské Budějovice, Czech Republic.
C Neil HunterDepartment of Molecular Biology and Biotechnology, University of Sheffield Sheffield, UK.
University of Sheffield · GBCzech Academy of Sciences, Institute of Microbiology · CZUniversity of Oxford · GBUniversity of South Bohemia in České Budějovice · CZ

Funding

Biotechnology and Biological Sciences Research Council BB/G021546/1Biotechnology and Biological Sciences Research Council BB/M000265/1Biotechnology and Biological Sciences Research Council BB/M012166/1
6 · The paper itself

Abstract

In the chlorophyll (Chl) biosynthesis pathway the formation of protochlorophyllide is catalyzed by Mg-protoporphyrin IX methyl ester (MgPME) cyclase. The Ycf54 protein was recently shown to form a complex with another component of the oxidative cyclase, Sll1214 (CycI), and partial inactivation of the ycf54 gene leads to Chl deficiency in cyanobacteria and plants. The exact function of the Ycf54 is not known, however, and further progress depends on construction and characterization of a mutant cyanobacterial strain with a fully inactivated ycf54 gene. Here, we report the complete deletion of the ycf54 gene in the cyanobacterium Synechocystis 6803; the resulting Δycf54 strain accumulates huge concentrations of the cyclase substrate MgPME together with another pigment, which we identified using nuclear magnetic resonance as 3-formyl MgPME. The detection of a small amount (~13%) of Chl in the Δycf54 mutant provides clear evidence that the Ycf54 protein is important, but not essential, for activity of the oxidative cyclase. The greatly reduced formation of protochlorophyllide in the Δycf54 strain provided an opportunity to use (35)S protein labeling combined with 2D electrophoresis to examine the synthesis of all known Chl-binding protein complexes under drastically restricted de novo Chl biosynthesis. We show that although the Δycf54 strain synthesizes very limited amounts of photosystem I and the CP47 and CP43 subunits of photosystem II (PSII), the synthesis of PSII D1 and D2 subunits and their assembly into the reaction centre (RCII) assembly intermediate were not affected. Furthermore, the levels of other Chl complexes such as cytochrome b 6 f and the HliD- Chl synthase remained comparable to wild-type. These data demonstrate that the requirement for de novo Chl molecules differs completely for each Chl-binding protein. Chl traffic and recycling in the cyanobacterial cell as well as the function of Ycf54 are discussed.

Indexed as

chlorophyllMg-protoporphyrin IX methylester cyclasephotosystem IIprotochlorophyllideSynechocystis 6803Ycf54

Identifiers

PMID27014315
PMCPMC4794507
OpenAlexW2329384462

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.