ArticleThe Journal of heredity2016
Isolation and Characterization of Microsatellite DNA Markers in the Deep-Sea Amphipod Paralicella tenuipes by Illumina MiSeq Sequencing.
Article in The Journal of heredity, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.
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7 citing papers in PubMed, 11 citations in OpenAlex.
- Sequencing Ultraconserved Elements (UCEs) for Marine Population Genomics: A Proof-of-Concept Using a Deep-Sea Mussel Species.Evolutionary applications · 2026Article
- Development and Application of Potentially Universal Microsatellite Markers for Pheasant Species.Animals : an open access journal from MDPI · 2023Article
- Isolation and characterization of 20 polymorphic microsatellites loci for Xenocypris davidi based on high-throughput sequencing.Molecular biology reports · 2020Article
- Comparative population genetic analyses suggest hybrid origin ofPlant diversity · 2020Article
- Article
- Mitochondrial genome and polymorphic microsatellite markers from the abyssal spongeMarine biodiversity : a journal of the Senckenberg Research Institute · 2018Article
- Genome size variation in deep-sea amphipods.Royal Society open science · 2017Article
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Authors and funding
3 authors at 1 institution in 1 country.
Funding
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Abstract
Here, we describe the development of 16 polymorphic microsatellite markers using an Illumina MiSeq sequencing approach in the deep-sea amphipod Paralicella tenuipes A total of 25 577 844 DNA sequences were filtered for microsatellite motifs of which 197 873 sequences were identified. From these sequences, 64 had sufficient flanking regions for primer design and 16 of these loci were polymorphic. Between 5 and 30 alleles were detected per locus, with an average of 13.63 alleles per locus, across a total of 120 individuals from 5 separate deep sea trenches from the Pacific Ocean. For the 16 loci, observed and expected heterozygosity values ranged from 0.116 to 0.414 and 0.422 to 0.820, respectively, with one locus displaying significant deviation from Hardy-Weinberg equilibrium. The microsatellite loci that have been isolated and described here are the first molecular markers developed for deep sea amphipods and will be invaluable for elucidating the genetic population structure and the extent of connectivity between deep ocean trenches.
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