Evidence map›Paper›PMID 27012456›Full record

ArticleGenomics, proteomics & bioinformatics2016

Genomic, Lipidomic and Metabolomic Analysis of Cyclooxygenase-null Cells: Eicosanoid Storm, Cross Talk, and Compensation by COX-1.

Abul B M M K Islam, Mandar Dave, Sonia Amin, Roderick V Jensen, Ashok R Amin

Abstract read
In one paragraph

Article in Genomics, proteomics & bioinformatics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Abul B M M K IslamDepartment of Genetic Engineering and Biotechnology, University of Dhaka, Dhaka 1000, Bangladesh.
Mandar DaveDepartment of Rheumatology, New York University Hospital for Joint Diseases, New York, NY 10003, USA; Department of Biology and Chemistry, Essex County College, Newark, NJ 07102, USA.
Sonia AminDepartment of Biological Sciences, College of Science, Virginia Tech Blacksburg, VA 24060, USA.
Roderick V JensenDepartment of Biological Sciences, College of Science, Virginia Tech Blacksburg, VA 24060, USA.
Ashok R AminDepartment of Genetic Engineering and Biotechnology, University of Dhaka, Dhaka 1000, Bangladesh; Department of Rheumatology, New York University Hospital for Joint Diseases, New York, NY 10003, USA; Department of Biological Sciences, College of Science, Virginia Tech Blacksburg, VA 24060, USA; Department of Pathology, New York University School of Medicine, New York, NY 10016, USA; RheuMatrix Inc., Blacksburg, VA 24060, USA. Electronic address: ashokamin2004@yahoo.com.

Funding

COX-2 EICOSANOIDS IN ARTHRITISR01AR047206 · NIAMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ABRAMSON, STEVEN B · 2001 to 2005
$1.5M
NIAMS NIH HHS R01 AR047206
6 · The paper itself

Abstract

The constitutively-expressed cyclooxygenase 1 (COX-1) and the inducible COX-2 are both involved in the conversion of arachidonic acid (AA) to prostaglandins (PGs). However, the functional roles of COX-1 at the cellular level remain unclear. We hypothesized that by comparing differential gene expression and eicosanoid metabolism in lung fibroblasts from wild-type (WT) mice and COX-2(-/-) or COX-1(-/-) mice may help address the functional roles of COX-1 in inflammation and other cellular functions. Compared to WT, the number of specifically-induced transcripts were altered descendingly as follows: COX-2(-/-)>COX-1(-/-)>WT+IL-1β. COX-1(-/-) or COX-2(-/-) cells shared about 50% of the induced transcripts with WT cells treated with IL-1β, respectively. An interactive "anti-inflammatory, proinflammatory, and redox-activated" signature in the protein-protein interactome map was observed in COX-2(-/-) cells. The augmented COX-1 mRNA (in COX-2(-/-) cells) was associated with the upregulation of mRNAs for glutathione S-transferase (GST), superoxide dismutase (SOD), NAD(P)H dehydrogenase quinone 1 (NQO1), aryl hydrocarbon receptor (AhR), peroxiredoxin, phospholipase, prostacyclin synthase, and prostaglandin E synthase, resulting in a significant increase in the levels of PGE2, PGD2, leukotriene B4 (LTB4), PGF1α, thromboxane B2 (TXB2), and PGF2α. The COX-1 plays a dominant role in shifting AA toward the LTB4 pathway and anti-inflammatory activities. Compared to WT, the upregulated COX-1 mRNA in COX-2(-/-) cells generated an "eicosanoid storm". The genomic characteristics of COX-2(-/-) is similar to that of proinflammatory cells as observed in IL-1β induced WT cells. COX-1(-/-) and COX-2(-/-) cells exhibited compensation of various eicosanoids at the genomic and metabolic levels.

Indexed as

GenomicsMetabolomicsAnimalsCells, CulturedCyclooxygenase 1Cyclooxygenase 2EicosanoidsFibroblastsGene ExpressionGlutathione TransferaseInflammationInterleukin-1betaMiceMice, KnockoutNAD(P)H Dehydrogenase (Quinone)Phospholipases A2Cyclooxygenase 1Cyclooxygenase 2EicosanoidsGlutathione TransferaseInterleukin-1betaNAD(P)H Dehydrogenase (Quinone)Nqo1 protein, mousePhospholipases A2ProstaglandinsProtein IsoformsSuperoxide DismutaseGenomicsInflammationLung fibroblastsMetabolomicsProstaglandins

Identifiers

PMID27012456
PMCPMC4880957

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.