Evidence map›Paper›PMID 27009801›Full record

ArticleBiochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology2016

An undergraduate laboratory class using CRISPR/Cas9 technology to mutate drosophila genes.

Vanesa Adame, Holly Chapapas, Marilyn Cisneros, Carol Deaton, Sophia Deichmann, Chauncey Gadek, TyAnna L Lovato, Maria B Chechenova, Paul Guerin, Richard M Cripps

Abstract read
In one paragraph

Article in Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Biochemistry Learning in Higher Education: A Systematic Review on Methodologies and Teaching Resources.Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology
    Pooled it
  2. Article
  3. "Designer babies?!" A CRISPR-based learning module for undergraduates built around the CCR5 gene.Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology · 2021
    Article
  4. Article
  5. Article
  6. CRISPR Gene Editing in Yeast: An Experimental Protocol for an Upper-Division Undergraduate Laboratory Course.Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology · 2018
    Article
  7. Absence of the Drosophila jump muscle actin Act79B is compensated by up-regulation of Act88F.Developmental dynamics : an official publication of the American Association of Anatomists · 2018
    Article
  8. Article
  9. Article
  10. An undergraduate research experience in CRISPR-Cas9 mediated eukaryotic genome editing to teach fundamental biochemistry techniques.Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology
    Article
  11. An effective Caenorhabditis elegans CRISPR training module for high school and undergraduate summer research experiences in molecular biology.Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Vanesa AdameDepartment of Biology, University of New Mexico, Albuquerque, New Mexico, 87131.
Holly ChapapasDepartment of Biology, University of New Mexico, Albuquerque, New Mexico, 87131.
Marilyn CisnerosDepartment of Biology, University of New Mexico, Albuquerque, New Mexico, 87131.
Carol DeatonDepartment of Biology, University of New Mexico, Albuquerque, New Mexico, 87131.
Sophia DeichmannDepartment of Biology, University of New Mexico, Albuquerque, New Mexico, 87131.
Chauncey GadekDepartment of Biology, University of New Mexico, Albuquerque, New Mexico, 87131.
TyAnna L LovatoDepartment of Biology, University of New Mexico, Albuquerque, New Mexico, 87131.
Maria B ChechenovaDepartment of Biology, University of New Mexico, Albuquerque, New Mexico, 87131.
Paul GuerinInstitute for Social Research, University of New Mexico, Albuquerque, New Mexico, 87131.
Richard M CrippsDepartment of Biology, University of New Mexico, Albuquerque, New Mexico, 87131.

Funding

University of New Mexico: MARC U*STAR Undergraduate Training ProgramT34GM008751 · NIGMS · UNIVERSITY OF NEW MEXICO · PI TAKACS-VESBACH, CRISTINA D. · 2000 to 2021
$6.0M
Pilot Project ProgramP30GM110907 · NIGMS · UNIVERSITY OF NEW MEXICO · PI MILLER, ROBERT D · 2014 to 2018
$5.4M
COBRE Center for Evolutionary and Theoretical ImmunologyP20GM103452 · NIGMS · UNIVERSITY OF NEW MEXICO · PI LOKER, ERIC SAMUEL · 2012 to 2013
$4.2M
NIGMS NIH HHS P20 GM103452NIGMS NIH HHS P30 GM110907NIGMS NIH HHS T34 GM008751
6 · The paper itself

Abstract

CRISPR/Cas9 genome editing technology is used in the manipulation of genome sequences and gene expression. Because of the ease and rapidity with which genes can be mutated using CRISPR/Cas9, we sought to determine if a single-semester undergraduate class could be successfully taught, wherein students isolate mutants for specific genes using CRISPR/Cas9. Six students were each assigned a single Drosophila gene, for which no mutants currently exist. Each student designed and created plasmids to encode single guide RNAs that target their selected gene; injected the plasmids into Cas9-expressing embryos, in order to delete the selected gene; carried out a three-generation cross to test for germline transmission of a mutated allele and generate a stable stock of the mutant; and characterized the mutant alleles by PCR and sequencing. Three genes out of six were successfully mutated. Pre- and post- survey evaluations of the students in the class revealed that student attitudes towards their research competencies increased, although the changes were not statistically significant. We conclude that it is feasible to develop a laboratory genome editing class, to provide effective laboratory training to undergraduate students, and to generate mutant lines for use by the broader scientific community. © 2016 by The International Union of Biochemistry and Molecular Biology, 44:263-275, 2016.

Indexed as

Amino Acid SequenceAnimalsBase SequenceCRISPR-Cas SystemsDrosophilaDrosophila ProteinsFemaleGene TargetingGenetic EngineeringGenome, InsectMaleMolecular BiologyMutationPlasmidsRNA EditingDrosophila ProteinsCRISPRdrosophilalaboratory classresearchundergraduate

Identifiers

PMID27009801
PMCPMC5377917

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.