Evidence map›Paper›PMID 27009386›Full record

ArticleScientific reports2016

Genome-Wide Identification of R2R3-MYB Genes and Expression Analyses During Abiotic Stress in Gossypium raimondii.

Qiuling He, Don C Jones, Wei Li, Fuliang Xie, Jun Ma, Runrun Sun, Qinglian Wang, Shuijin Zhu, Baohong Zhang

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed.

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  12. Identification and Phylogenetic Analysis of thePlants (Basel, Switzerland) · 2023
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  20. Association analysis of germination level cold stress tolerance and candidate gene identification in Upland cotton (Physiology and molecular biology of plants : an international journal of functional plant biology · 2022
    Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Qiuling HeDepartment of Biology, East Carolina University, Greenville, NC 27858, United States of America.
Don C JonesCotton Incorporated, Cary, NC 27513, USA.
Wei LiDepartment of Agronomy, Zhejiang Key Laboratory of Crop Germplasm, Zhejiang University, Hangzhou 310058, China.
Fuliang XieDepartment of Biology, East Carolina University, Greenville, NC 27858, United States of America.
Jun MaDepartment of Biology, East Carolina University, Greenville, NC 27858, United States of America.
Runrun SunDepartment of Biology, East Carolina University, Greenville, NC 27858, United States of America.
Qinglian WangHenan Institute of Science and Technology, Xinxiang, Henan 453003, China.
Shuijin ZhuDepartment of Agronomy, Zhejiang Key Laboratory of Crop Germplasm, Zhejiang University, Hangzhou 310058, China.
Baohong ZhangDepartment of Biology, East Carolina University, Greenville, NC 27858, United States of America.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The R2R3-MYB is one of the largest families of transcription factors, which have been implicated in multiple biological processes. There is great diversity in the number of R2R3-MYB genes in different plants. However, there is no report on genome-wide characterization of this gene family in cotton. In the present study, a total of 205 putative R2R3-MYB genes were identified in cotton D genome (Gossypium raimondii), that are much larger than that found in other cash crops with fully sequenced genomes. These GrMYBs were classified into 13 groups with the R2R3-MYB genes from Arabidopsis and rice. The amino acid motifs and phylogenetic tree were predicted and analyzed. The sequences of GrMYBs were distributed across 13 chromosomes at various densities. The results showed that the expansion of the G. Raimondii R2R3-MYB family was mainly attributable to whole genome duplication and segmental duplication. Moreover, the expression pattern of 52 selected GrMYBs and 46 GaMYBs were tested in roots and leaves under different abiotic stress conditions. The results revealed that the MYB genes in cotton were differentially expressed under salt and drought stress treatment. Our results will be useful for determining the precise role of the MYB genes during stress responses with crop improvement.

Indexed as

Gene ExpressionGenes, mybDroughtsGene DuplicationGene Expression Regulation, PlantGenome, PlantGossypiumMultigene FamilyPhylogenyPlant ProteinsSalinitySegmental Duplications, GenomicSequence Analysis, ProteinStress, PhysiologicalPlant Proteins

Identifiers

PMID27009386
PMCPMC4806351

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.