Evidence map›Paper›PMID 27008706›Full record

ArticleOncotarget2016

Aging-related elevation of sphingoid bases shortens yeast chronological life span by compromising mitochondrial function.

Jae Kyo Yi, Ruijuan Xu, Eunmi Jeong, Izolda Mileva, Jean-Philip Truman, Chih-Li Lin, Kai Wang, Justin Snider, Sally Wen, Lina M Obeid and 2 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.3field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. Lipids as Regulators of Cellular Senescence.Frontiers in physiology · 2022
    Review
  4. Article
  5. Review
  6. Sphingosine kinase 1 downregulation is required for adaptation to serine deprivation.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2021
    Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Jae Kyo YiGraduate Program in Molecular and Cellular Biology, Stony Brook University, Stony Brook, NY, USA.
Ruijuan XuDepartment of Medicine, Stony Brook University, Stony Brook, NY, USA.
Eunmi JeongDepartment of Medicine, Stony Brook University, Stony Brook, NY, USA.
Izolda MilevaDepartment of Medicine, Stony Brook University, Stony Brook, NY, USA.
Jean-Philip TrumanDepartment of Medicine, Stony Brook University, Stony Brook, NY, USA.
Chih-Li LinGraduate Program in Molecular and Cellular Biology, Stony Brook University, Stony Brook, NY, USA.
Kai WangDepartment of Medicine, Stony Brook University, Stony Brook, NY, USA.
Justin SniderGraduate Program in Molecular and Cellular Biology, Stony Brook University, Stony Brook, NY, USA.
Sally WenDepartment of Medicine, Stony Brook University, Stony Brook, NY, USA.
Lina M ObeidDepartment of Medicine, Stony Brook University, Stony Brook, NY, USA.
Yusuf A HannunDepartment of Medicine, Stony Brook University, Stony Brook, NY, USA.
Cungui MaoDepartment of Medicine, Stony Brook University, Stony Brook, NY, USA.
Stony Brook University · USNorthport VA Medical Center · US

Funding

Sphingolipids in Cancer Therapy and AngiogenesisP01CA097132 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI Daniel Canals · 2003 to 2026
$30.8M
Neutral Sphingomyelinases and Bioactive CeramidesR35GM118128 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI HANNUN, YUSUF AWNI · 2016 to 2025
$7.9M
Role and Regulation of Ceramide Synthases in ApoptosisR01GM097741 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI LUBERTO, CHIARA · 2011 to 2019
$3.5M
The Role of Ceramidases in Cancer ChemotherapyR01CA163825 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI MAO, CUNGUI · 2012 to 2016
$1.6M
Alkaline Ceramidase and Sphingolipid SignalingR01CA104834 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI MAO, CUNGUI · 2004 to 2008
$1.1M
Regulation and Role of Ceramidase in InflammationI01BX000156 · VA · RALPH H JOHNSON VA MEDICAL CENTER · PI OBEID, LINA M · 2009 to 2017
–
BLRD VA I01 BX000156NCI NIH HHS P01 CA097132NCI NIH HHS R01 CA104834NCI NIH HHS R01 CA163825NIGMS NIH HHS R01 GM097741NIGMS NIH HHS R35 GM118128
6 · The paper itself

Abstract

Sphingoid bases (SBs) as bioactive sphingolipids, have been implicated in aging in yeast. However, we know neither how SBs are regulated during yeast aging nor how they, in turn, regulate it. Herein, we demonstrate that the yeast alkaline ceramidases (YPC1 and YDC1) and SB kinases (LCB4 and LCB5) cooperate in regulating SBs during the aging process and that SBs shortens chronological life span (CLS) by compromising mitochondrial functions. With a lipidomics approach, we found that SBs were increased in a time-dependent manner during yeast aging. We also demonstrated that among the enzymes known for being responsible for the metabolism of SBs, YPC1 was upregulated whereas LCB4/5 were downregulated in the course of aging. This inverse regulation of YPC1 and LCB4/5 led to the aging-related upregulation of SBs in yeast and a reduction in CLS. With the proteomics-based approach (SILAC), we revealed that increased SBs altered the levels of proteins related to mitochondria. Further mechanistic studies demonstrated that increased SBs inhibited mitochondrial fusion and caused fragmentation, resulting in decreases in mtDNA copy numbers, ATP levels, mitochondrial membrane potentials, and oxygen consumption. Taken together, these results suggest that increased SBs mediate the aging process by impairing mitochondrial structural integrity and functions.

Indexed as

AgingCeramidesDNA, MitochondrialMembrane Potential, MitochondrialMitochondriaSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSphingolipidsCeramidesDNA, MitochondrialSaccharomyces cerevisiae ProteinsSphingolipidsagingGerotargetmitochondriasphingoid basessphingolipidsyeast

Identifiers

PMID27008706
PMCPMC5008273
OpenAlexW2298025945

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.