ArticleBioMed research international2016
VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity.
Article in BioMed research international, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 23 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
23 citing papers in PubMed.
- Article
- Genome-Wide Identification and Characterization ofInternational journal of molecular sciences · 2025Article
- Chromosome-level genome provides new insight into the overwintering process of Korla pear (Pyrus sinkiangensis Yu).BMC plant biology · 2024Article
- Detection of colinear blocks and synteny and evolutionary analyses based on utilization of MCScanX.Nature protocols · 2024Review
- A chromosome-level genome assembly ofHorticulture research · 2024Article
- Genomic evolution and insights into agronomic trait innovations of Sesamum species.Plant communications · 2024Article
- Genomic and metabolomic insights into the antimicrobial compounds and plant growth-promoting potential of Bacillus velezensis Q-426.BMC genomics · 2023Article
- Genome-wide identification and analysis of ACP gene family in Sorghum bicolor (L.) Moench.BMC genomics · 2022Review
- Computational analysis of potential candidate genes involved in the cold stress response of ten Rosaceae members.BMC genomics · 2022Article
- Chromosome-scale genome assembly of Rhododendron molle provides insights into its evolution and terpenoid biosynthesis.BMC plant biology · 2022Article
- Transitional genomes and nutritional role reversals identified for dual symbionts of adelgids (Aphidoidea: Adelgidae).The ISME journal · 2022Article
- Chromosome-scale genome assembly ofFrontiers in plant science · 2022Article
- Reduced chromatin accessibility underlies gene expression differences in homologous chromosome arms of diploid Aegilops tauschii and hexaploid wheat.GigaScience · 2020Article
- The JAX Synteny Browser for mouse-human comparative genomics.Mammalian genome : official journal of the International Mammalian Genome Society · 2019Article
- The genome ofApplications in plant sciences · 2019Article
- Corrigendum #2 to "VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity".BioMed research international · 2019Article
- Comparative genomics and the nature of placozoan species.PLoS biology · 2018Article
- Partnering With a Pest: Genomes of Hemlock Woolly Adelgid Symbionts Reveal Atypical Nutritional Provisioning Patterns in Dual-Obligate Bacteria.Genome biology and evolution · 2018Article
- Efficient algorithms for Longest Common Subsequence of two bucket orders to speed up pairwise genetic map comparison.PloS one · 2018Article
- Single-molecule sequencing and Hi-C-based proximity-guided assembly of amaranth (Amaranthus hypochondriacus) chromosomes provide insights into genome evolution.BMC biology · 2017Article
Corrections and comments
- Erratum issued
- Erratum issued
Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundIn order to understand the colocalization of genetic loci amongst species, synteny and collinearity analysis is a frequent task in comparative genomics research. However many analysis software packages are not effective in visualizing results. Problems include lack of graphic visualization, simple representation, or inextensible format of outputs. Moreover, higher throughput sequencing technology requires higher resolution image output. IMPLEMENTATION: To fill this gap, this paper publishes VGSC, the Vector Graph toolkit of genome Synteny and Collinearity, and its online service, to visualize the synteny and collinearity in the common graphical format, including both raster (JPEG, Bitmap, and PNG) and vector graphic (SVG, EPS, and PDF).
resultUsers can upload sequence alignments from blast and collinearity relationship from the synteny analysis tools. The website can generate the vector or raster graphical results automatically. We also provide a java-based bytecode binary to enable the command-line execution.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.