Evidence map›Paper›PMID 27006647›Full record

ArticleJournal of biomolecular techniques : JBT2016

N-Terminal Amino Acid Sequence Determination of Proteins by N-Terminal Dimethyl Labeling: Pitfalls and Advantages When Compared with Edman Degradation Sequence Analysis.

Elizabeth Chang, Sergei Pourmal, Chun Zhou, Rupesh Kumar, Marianna Teplova, Nikola P Pavletich, Kenneth J Marians, Hediye Erdjument-Bromage

Abstract readComparative Study
In one paragraph

Article in Journal of biomolecular techniques : JBT, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Elizabeth Chang1 Microchemistry and Proteomics Core Laboratory, 2 Structural Biology and 3 Molecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Sergei Pourmal1 Microchemistry and Proteomics Core Laboratory, 2 Structural Biology and 3 Molecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Chun Zhou1 Microchemistry and Proteomics Core Laboratory, 2 Structural Biology and 3 Molecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Rupesh Kumar1 Microchemistry and Proteomics Core Laboratory, 2 Structural Biology and 3 Molecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Marianna Teplova1 Microchemistry and Proteomics Core Laboratory, 2 Structural Biology and 3 Molecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Nikola P Pavletich1 Microchemistry and Proteomics Core Laboratory, 2 Structural Biology and 3 Molecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Kenneth J Marians1 Microchemistry and Proteomics Core Laboratory, 2 Structural Biology and 3 Molecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Hediye Erdjument-Bromage1 Microchemistry and Proteomics Core Laboratory, 2 Structural Biology and 3 Molecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Topoisomerases, Condensins, and Chromosome SegregationR01GM034558 · NIGMS · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI MARIANS, KENNETH J · 1985 to 2017
$6.6M
NCI NIH HHS P30 CA008748NIGMS NIH HHS R01 GM034558
6 · The paper itself

Abstract

In recent history, alternative approaches to Edman sequencing have been investigated, and to this end, the Association of Biomolecular Resource Facilities (ABRF) Protein Sequencing Research Group (PSRG) initiated studies in 2014 and 2015, looking into bottom-up and top-down N-terminal (Nt) dimethyl derivatization of standard quantities of intact proteins with the aim to determine Nt sequence information. We have expanded this initiative and used low picomole amounts of myoglobin to determine the efficiency of Nt-dimethylation. Application of this approach on protein domains, generated by limited proteolysis of overexpressed proteins, confirms that it is a universal labeling technique and is very sensitive when compared with Edman sequencing. Finally, we compared Edman sequencing and Nt-dimethylation of the same polypeptide fragments; results confirm that there is agreement in the identity of the Nt amino acid sequence between these 2 methods.

Indexed as

Amino Acid SequenceAnimalsHorsesMyoglobinSequence Analysis, ProteinStaining and LabelingTandem Mass SpectrometryMyoglobinbottom-up MSin-gel digestionNt protein dimethylationNt sequencing

Identifiers

PMID27006647
PMCPMC4802820

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.