Evidence map›Paper›PMID 27006503›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Unique coupling of mono- and dioxygenase chemistries in a single active site promotes heme degradation.

Toshitaka Matsui, Shusuke Nambu, Celia W Goulding, Satoshi Takahashi, Hiroshi Fujii, Masao Ikeda-Saito

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
  2. Stabilization of the Ferryl═Oxoheme Form ofJournal of the American Chemical Society · 2025
    Article
  3. Heme-copper and Heme OJournal of inorganic biochemistry · 2023
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Heme-FeJournal of the American Chemical Society · 2020
    Article
  10. Structure of aBiochemistry · 2019
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Toshitaka MatsuiInstitute of Multidisciplinary Research for Advanced Materials, Tohoku University, Katahira, Aoba, Sendai 980-8577, Japan; matsui@tagen.tohoku.ac.jp mis2@tagen.tohoku.ac.jp.
Shusuke NambuInstitute of Multidisciplinary Research for Advanced Materials, Tohoku University, Katahira, Aoba, Sendai 980-8577, Japan;
Celia W GouldingDepartment of Molecular Biology and Biochemistry, University of California, Irvine, CA 92697; Department of Pharmaceutical Sciences, University of California, Irvine, CA 92697;
Satoshi TakahashiInstitute of Multidisciplinary Research for Advanced Materials, Tohoku University, Katahira, Aoba, Sendai 980-8577, Japan;
Hiroshi FujiiDepartment of Chemistry, Graduate School of Humanities and Sciences, Nara Women's University, Kitauoyanishi, Nara 630-8506, Japan.
Masao Ikeda-SaitoInstitute of Multidisciplinary Research for Advanced Materials, Tohoku University, Katahira, Aoba, Sendai 980-8577, Japan; matsui@tagen.tohoku.ac.jp mis2@tagen.tohoku.ac.jp.
Tohoku University · JPNara Women's University · JPUniversity of California, Irvine · US

Funding

Vulnerabilities in Mycobacterial Cell-Wall BiogenesisP01AI095208 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI ZHANG, JUNJIE · 2012 to 2022
$19.8M
Structural And Biochemical Characterization Of A Novel Mycobacterial Heme UptakeR01AI081161 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI GOULDING, CELIA · 2009 to 2013
$1.8M
NIAID NIH HHS R01 AI081161
6 · The paper itself

Abstract

Bacterial pathogens must acquire host iron for survival and colonization. Because free iron is restricted in the host, numerous pathogens have evolved to overcome this limitation by using a family of monooxygenases that mediate the oxidative cleavage of heme into biliverdin, carbon monoxide, and iron. However, the etiological agent of tuberculosis, Mycobacterium tuberculosis, accomplishes this task without generating carbon monoxide, which potentially induces its latent state. Here we show that this unusual heme degradation reaction proceeds through sequential mono- and dioxygenation events within the single active center of MhuD, a mechanism unparalleled in enzyme catalysis. A key intermediate of the MhuD reaction is found to be meso-hydroxyheme, which reacts with O2 at an unusual position to completely suppress its monooxygenation but to allow ring cleavage through dioxygenation. This mechanistic change, possibly due to heavy steric deformation of hydroxyheme, rationally explains the unique heme catabolites of MhuD. Coexistence of mechanistically distinct functions is a previously unidentified strategy to expand the physiological outcome of enzymes, and may be applied to engineer unique biocatalysts.

Indexed as

Carbon MonoxideCatalysisCatalytic DomainDioxygenasesHemeHeme Oxygenase (Decyclizing)IronMixed Function OxygenasesMycobacterium tuberculosisOxidation-ReductionOxygenTuberculosisCarbon MonoxideDioxygenasesHemeHeme Oxygenase (Decyclizing)IronMixed Function OxygenasesOxygendioxygenationheme degradationMhuDmonooxygenationMycobacterium tuberculosis

Identifiers

PMID27006503
PMCPMC4833273
OpenAlexW2309960393

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.