Evidence map›Paper›PMID 27006501›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Putative oncogene Brachyury (T) is essential to specify cell fate but dispensable for notochord progenitor proliferation and EMT.

Jianjian Zhu, Kin Ming Kwan, Susan Mackem

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 54 citations in OpenAlex.

  1. Review
  2. Genetic interaction betweenbioRxiv : the preprint server for biology · 2026
    Article
  3. Genetic interaction betweenResearch square · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Characterization of the Nucleus Pulposus Progenitor Cells via Spatial Transcriptomics.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  9. Article
  10. Snail Transcriptionally RepressesInternational journal of molecular sciences · 2024
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Jianjian ZhuCancer & Developmental Biology Laboratory (CDBL), Center for Cancer Research (CCR), National Cancer Institute (NCI), Frederick, MD 21702;
Kin Ming KwanSchool of Life Sciences, Chinese University of Hong Kong, Hong Kong, People's Republic of China.
Susan MackemCancer & Developmental Biology Laboratory (CDBL), Center for Cancer Research (CCR), National Cancer Institute (NCI), Frederick, MD 21702; mackems@mail.nih.gov.
Center for Cancer Research · USChinese University of Hong Kong · CN

Funding

Role of Brachyury in regulating notochord development and neoplasiaZIABC011121 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MACKEM, SUSAN · 2009 to 2020
$1.4M
6 · The paper itself

Abstract

The transcription factor Brachyury (T) gene is expressed throughout primary mesoderm (primitive streak and notochord) during early embryonic development and has been strongly implicated in the genesis of chordoma, a sarcoma of notochord cell origin. Additionally, T expression has been found in and proposed to play a role in promoting epithelial-mesenchymal transition (EMT) in various other types of human tumors. However, the role of T in normal mammalian notochord development and function is still not well-understood. We have generated an inducible knockdown model to efficiently and selectively deplete T from notochord in mouse embryos. In combination with genetic lineage tracing, we show that T function is essential for maintaining notochord cell fate and function. Progenitors adopt predominantly a neural fate in the absence of T, consistent with an origin from a common chordoneural progenitor. However, T function is dispensable for progenitor cell survival, proliferation, and EMT, which has implications for the therapeutic targeting of T in chordoma and other cancers.

Indexed as

AnimalsBrachyury ProteinCell DifferentiationCell LineageCell ProliferationEmbryo, MammalianEmbryonic DevelopmentEpithelial-Mesenchymal TransitionFemaleFetal ProteinsMesodermMiceMice, TransgenicNotochordPrimitive StreakRNA InterferenceBrachyury ProteinFetal ProteinsRNA, Small InterferingT-Box Domain ProteinsBrachyurycell fateEMTnotochord

Identifiers

PMID27006501
PMCPMC4833266
OpenAlexW2307880694

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.