Evidence map›Paper›PMID 27005313›Full record

ArticleBMC veterinary research2016

Identification of amino acid variation in the prion protein associated with classical scrapie in Canadian dairy goats.

Vythegi Srithayakumar, Gordon B Mitchell, Bradley N White

Open access · goldAbstract read
In one paragraph

Article in BMC veterinary research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Genetic Variation in the Prion Protein Gene (Animals : an open access journal from MDPI · 2021
    Article
  3. Animals : an open access journal from MDPI · 2021
    Article
  4. Article
  5. Neurotheranostics as personalized medicines.Advanced drug delivery reviews · 2019
    Review
  6. Article
  7. The First Report of Polymorphisms and Genetic Features of theInternational journal of molecular sciences · 2019
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Vythegi SrithayakumarNatural Resources DNA Profiling and Forensics Centre, DNA Building, Trent University, 2140 East Bank Drive, Peterborough, ON, Canada. vythegisrithayakumar@trentu.ca.
Gordon B MitchellNational and OIE Reference Laboratory for Scrapie and CWD, Ottawa Laboratory Fallowfield, Canadian Food Inspection Agency, 3851 Fallowfield Road, Ottawa, ON, Canada.
Bradley N WhiteNatural Resources DNA Profiling and Forensics Centre, DNA Building, Trent University, 2140 East Bank Drive, Peterborough, ON, Canada.
Trent University · CACanadian Food Inspection Agency · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundA clear association of amino acid variation in the prion protein gene (PRNP) with susceptibility and resistance to classical scrapie exists in sheep, but not in goats. In this study we examined DNA sequence variation in the PRNP of 149 animals from two scrapie-infected herds of Saanen dairy goats, and identified 6 non-synonymous variants in the coding region.

resultsIn the larger herd, all of the 54 scrapie-affected goats tested had at least one allele with the arginine (R) codon at position 211, with 52 being homozygous for that variant. No animal homozygous for the glutamine (Q) codon at 211 were affected and only two heterozygotes (R/Q) were affected. A weak association was found at position 146 and no significant associations were found with amino acid variation at the remaining four variant positions (142, 143, 222 and 240), however, the allelic variation was low. Similar patterns were observed in the second scrapie-affected herd.

conclusionWe also evaluated previous studies on goat herds affected with scrapie and this relationship of R susceptibility and Q resistance at 211 was present independent of the genotypes at the other positions including 222. The fact that glutamine at 211 provides a significant protective property to scrapie irrespective of the other positions could be important for breeding strategies aimed at improving herd resistance to scrapie, while maintaining important productivity traits.

Indexed as

Genetic Predisposition to DiseaseAmino AcidsAnimalsBreedingCanadaDairyingGoat DiseasesGoatsPolymorphism, GeneticPrion ProteinsScrapieAmino AcidsPrion ProteinsBreedingGoatPrionResistanceScrapieSusceptibilityVariation

Identifiers

PMID27005313
PMCPMC4804529
OpenAlexW2310943058

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.