Evidence map›Paper›PMID 27004988›Full record

ArticleScientific reports2016

Crystal structure of the vicilin from Solanum melongena reveals existence of different anionic ligands in structurally similar pockets.

Abha Jain, Ashish Kumar, Dinakar M Salunke

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Overexpression ofFrontiers in plant science · 2026
    Article
  2. Review
  3. Asthma-protective agents in dust from traditional farm environments.The Journal of allergy and clinical immunology · 2023
    Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Effects of AlProteomes · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Abha JainRegional Centre for Biotechnology, Faridabad-121001, India.
Ashish KumarRegional Centre for Biotechnology, Faridabad-121001, India.
Dinakar M SalunkeRegional Centre for Biotechnology, Faridabad-121001, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Crystal structure of a vicilin, SM80.1, was determined towards exploring its possible physiological functions. The protein was purified from Solanum melongena by combination of ammonium sulphate fractionation and size exclusion chromatography. Structure was determined ab initio at resolution of 1.5 Å by X-ray crystallography showing the three-dimensional topology of the trimeric protein. Each monomer of SM80.1 consists of two similar domains with hydrophobic binding pocket and each accommodating different ligands, i.e. acetate and pyroglutamate. The relatively high stability of these independent anionic ligands in similar pockets indicated a strict requirement of stabilization by hydrogen bonds with the charged residues, suggesting a degree of plasticity within the binding pocket. Comparison of SM80.1 structure with those of other 7S vicilins indicated conservation of putative binding pocket for anionic ligands. Here we propose the possibility of trapping of these ligands in the protein for their requirement in the metabolic processes.

Indexed as

Amino Acid SequenceAnionsBinding SitesChromatography, GelCrystallography, X-RayHydrogen BondingModels, MolecularPhylogenyProtein MultimerizationProtein StabilitySeed Storage ProteinsSolanum melongenaAnionsSeed Storage Proteinsvicilin protein, plant

Identifiers

PMID27004988
PMCPMC4804240

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.