Evidence map›Paper›PMID 27004849›Full record

ArticleScientific reports2016

Biochemical and functional characterization of glycosylation-associated mutational landscapes in colon cancer.

Srividya Venkitachalam, Leslie Revoredo, Vinay Varadan, Ryan E Fecteau, Lakshmeswari Ravi, James Lutterbaugh, Sanford D Markowitz, Joseph E Willis, Thomas A Gerken, Kishore Guda

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Cells · 2023
    Article
  12. A Blood-Based Metabolite Panel for Distinguishing Ovarian Cancer from Benign Pelvic Masses.Clinical cancer research : an official journal of the American Association for Cancer Research · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. The Role of Glycosyltransferases in Colorectal Cancer.International journal of molecular sciences · 2021
    Review
  18. Rare Variants in the DNA Repair Pathway and the Risk of Colorectal Cancer.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2021
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Srividya VenkitachalamCase Comprehensive Cancer Center, Case Western Reserve University, Cleveland OH 44106, U.S.A.
Leslie RevoredoDepartment of Chemistry, Case Western Reserve University, Cleveland OH 44106, U.S.A.
Vinay VaradanCase Comprehensive Cancer Center, Case Western Reserve University, Cleveland OH 44106, U.S.A.
Ryan E FecteauCase Comprehensive Cancer Center, Case Western Reserve University, Cleveland OH 44106, U.S.A.
Lakshmeswari RaviDivision of Hematology and Oncology, Case Western Reserve University, Cleveland OH 44106, U.S.A.
James LutterbaughDivision of Hematology and Oncology, Case Western Reserve University, Cleveland OH 44106, U.S.A.
Sanford D MarkowitzCase Comprehensive Cancer Center, Case Western Reserve University, Cleveland OH 44106, U.S.A.
Joseph E WillisCase Comprehensive Cancer Center, Case Western Reserve University, Cleveland OH 44106, U.S.A.
Thomas A GerkenDepartment of Chemistry, Case Western Reserve University, Cleveland OH 44106, U.S.A.
Kishore GudaCase Comprehensive Cancer Center, Case Western Reserve University, Cleveland OH 44106, U.S.A.
Case Western Reserve University · US

Funding

TUMOR METABOLISM PROGRAMP30CA043703 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI MARK R CHANCE · 1987 to 2026
$142.3M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007250 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI HUANG, ALEX YEE-CHEN · 1985 to 2023
$33.4M
Targeting 15-PGDH in Colon Cancer Prognosis, Prediction, Treatment and PreventionP50CA150964 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI MARKOWITZ, SANFORD D. · 2011 to 2022
$24.6M
Whole Exome Approaches for Esophageal Adenocarcinoma Susceptibility GenesU54CA163060 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI CHAK, AMITABH, GUDA, KISHORE · 2011 to 2022
$14.0M
TRAINING IN COMPUTATIONAL GENOMIC EPIDEMIOLOGY OF CANCERR25CA094186 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI LI, LI · 2002 to 2016
$6.8M
MUCIN SITE SPECIFIC O-GLYCOSYLATIONR01CA078834 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI GERKEN, THOMAS A · 1999 to 2012
$3.4M
Computational Genomic Epidemiology of Cancer (CoGEC) Training ProgramT32CA094186 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI Thomas Louis LaFramboise, Rong Xu · 2017 to 2026
$2.6M
Initiation and Regulation of Mucin-Type O-GlycosylationR01GM113534 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI GERKEN, THOMAS A · 2018 to 2023
$1.6M
Initiation and regulation of mucin-type O-glycosylationU01GM113534 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI GERKEN, THOMAS A · 2015 to 2017
$1.0M
Novel O-glycosylation Gene Mutations in Colon CancerK08CA148980 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI GUDA, KISHORE · 2010 to 2014
$682k
NCI NIH HHS K08 CA148980NCI NIH HHS P30 CA043703NCI NIH HHS P50 CA150964NCI NIH HHS R01 CA078834NCI NIH HHS R25 CA094186NCI NIH HHS R25T CA094186NCI NIH HHS T32 CA094186NCI NIH HHS U54 CA163060NIGMS NIH HHS R01 GM113534NIGMS NIH HHS T32 GM007250NIGMS NIH HHS U01 GM113534
6 · The paper itself

Abstract

The molecular basis of aberrant protein glycosylation, a pathological alteration widespread in colorectal cancers (CRC), and the mechanisms by which it contributes to tumor progression remain largely unknown. We performed targeted re-sequencing of 430 glycosylation-associated genes in a series of patient-derived CRC cell lines (N = 31) and matched primary tumor tissues, identifying 12 new significantly mutated glycosylation-associated genes in colon cancer. In particular, we observed an enrichment of mutations in genes (B3GNT2, B4GALT2, ST6GALNAC2) involved in the biosynthesis of N- and Cores 1-3 O-linked glycans in the colon, accounting for ~16% of the CRCs tested. Analysis of independent large-scale tumor tissue datasets confirmed recurrent mutations within these genes in colon and other gastrointestinal cancers. Systematic biochemical and phenotypic characterization of the candidate wild-type and mutant glycosyltransferases demonstrated these mutations as either markedly altering protein localization, post-translational modification, encoded enzymatic activities and/or the migratory potential of colon carcinoma cells. These findings suggest that functionally deleterious mutations in glycosyltransferase genes in part underlie aberrant glycosylation, and contribute to the pathogenesis of molecular subsets of colon and other gastrointestinal malignancies.

Indexed as

Cell Line, TumorColonic NeoplasmsDNA Mutational AnalysisGalactosyltransferasesGene Expression Regulation, NeoplasticGenetic Predisposition to DiseaseGlycosylationGlycosyltransferasesHumansN-AcetylglucosaminyltransferasesPolysaccharidesProtein Processing, Post-TranslationalSialyltransferasesB3GNT2 protein, humanB4GALT2 protein, humanGalactosyltransferasesGlycosyltransferasesN-AcetylglucosaminyltransferasesPolysaccharidesSialyltransferasesST6GALNAC2 protein, human

Identifiers

PMID27004849
PMCPMC4804330
OpenAlexW2312022076

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.