Evidence map›Paper›PMID 27002965›Full record

ArticleProtoplasma2017

In silico study on Arabidopsis BAG gene expression in response to environmental stresses.

Ganesh M Nawkar, Punyakishore Maibam, Joung Hun Park, Su Gyeong Woo, Cha Young Kim, Sang Yeol Lee, Chang Ho Kang

Open access · hybridAbstract read
In one paragraph

Article in Protoplasma, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 34 citations in OpenAlex.

  1. Molecular Dissection of theInternational journal of molecular sciences · 2026
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  18. TheInternational journal of molecular sciences · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Ganesh M NawkarDivision of Applied Life Science and PMBBRC, Gyeongsang National University, 501 Jinju-daero, Jinju, 52828, Republic of Korea.
Punyakishore MaibamDivision of Applied Life Science and PMBBRC, Gyeongsang National University, 501 Jinju-daero, Jinju, 52828, Republic of Korea.
Joung Hun ParkDivision of Applied Life Science and PMBBRC, Gyeongsang National University, 501 Jinju-daero, Jinju, 52828, Republic of Korea.
Su Gyeong WooEco-friendly Bio-Material Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Jeongeup, 580-185, Republic of Korea.
Cha Young KimEco-friendly Bio-Material Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Jeongeup, 580-185, Republic of Korea.
Sang Yeol LeeDivision of Applied Life Science and PMBBRC, Gyeongsang National University, 501 Jinju-daero, Jinju, 52828, Republic of Korea. sylee@gnu.ac.kr.
Chang Ho KangDivision of Applied Life Science and PMBBRC, Gyeongsang National University, 501 Jinju-daero, Jinju, 52828, Republic of Korea. jacobgnu69@gnu.ac.kr.
Gyeongsang National University · KRKorea Research Institute of Bioscience and Biotechnology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BAG (Bcl-2 athanogene) family proteins are conserved in a wide range of eukaryotes, and they have been proposed to play a crucial role in plant programmed cell death (PCD). During the past decade, with the help of advanced bioinformatics tools, seven homologs of BAG genes have been identified in the Arabidopsis genome; these genes are involved in pathogen attack and abiotic stress conditions. In this study, gene expression of Arabidopsis BAG family members under environmental stresses was analyzed using the Botany Array Resource (BAR) expression browser tool and the in silico data were partially confirmed by qRT-PCR analysis for the selected stress- and hormone-treated conditions related to environmental stresses. Particularly, the induction of AtBAG6 gene in response to heat shock was confirmed by using GUS reporter lines. The loss of the AtBAG6 gene resulted into impairment in basal thermotolerance of plant and showed enhanced cell death in response to heat stress. To elucidate the regulatory mechanisms of BAG genes, we analyzed ∼1-kbp promoter regions for the presence of stress-responsive elements. Our transcription profiling finally revealed that the Arabidopsis BAG genes differentially respond to environmental stresses under the control of specifically organized upstream regulatory elements.

Indexed as

Computer SimulationEnvironmentGene Expression Regulation, PlantArabidopsisArabidopsis ProteinsBase SequenceGenes, PlantGenes, ReporterGlucuronidaseHeat-Shock ResponseNucleotide MotifsPlant Growth RegulatorsPromoter Regions, GeneticReal-Time Polymerase Chain ReactionReproducibility of ResultsRNA, MessengerArabidopsis ProteinsGlucuronidasePlant Growth RegulatorsRNA, MessengerBcl-2 athanogene (BAG)Environmental stressIn silico dataStress-responsive elementsTranscription profiling

Identifiers

PMID27002965
PMCPMC5216074
OpenAlexW2309467137

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.