Evidence map›Paper›PMID 27002652›Full record

ArticleNature communications2016

Genomes of cryptic chimpanzee Plasmodium species reveal key evolutionary events leading to human malaria.

Sesh A Sundararaman, Lindsey J Plenderleith, Weimin Liu, Dorothy E Loy, Gerald H Learn, Yingying Li, Katharina S Shaw, Ahidjo Ayouba, Martine Peeters, Sheri Speede and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 98 papers.

0numbers the graph read from it
0cells of the map it votes in
98citing papers in PubMed
22.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

98 citing papers in PubMed, 172 citations in OpenAlex.

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38 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 3 countries.

Sesh A SundararamanDepartment of Medicine, University of Pennsylvania, Philadelphia, 19104 Pennsylvania, USA.
Lindsey J PlenderleithInstitute of Evolutionary Biology and Centre for Immunity, Infection and Evolution, University of Edinburgh, EH9 3FL Edinburgh, UK.
Weimin LiuDepartment of Medicine, University of Pennsylvania, Philadelphia, 19104 Pennsylvania, USA.
Dorothy E LoyDepartment of Medicine, University of Pennsylvania, Philadelphia, 19104 Pennsylvania, USA.
Gerald H LearnDepartment of Medicine, University of Pennsylvania, Philadelphia, 19104 Pennsylvania, USA.
Yingying LiDepartment of Medicine, University of Pennsylvania, Philadelphia, 19104 Pennsylvania, USA.
Katharina S ShawDepartment of Medicine, University of Pennsylvania, Philadelphia, 19104 Pennsylvania, USA.
Ahidjo AyoubaUnité Mixte Internationale 233, Institut de Recherche pour le Développement (IRD), INSERM U1175, University of Montpellier, 34394 Montpellier, France.
Martine PeetersUnité Mixte Internationale 233, Institut de Recherche pour le Développement (IRD), INSERM U1175, University of Montpellier, 34394 Montpellier, France.
Sheri SpeedeSanaga-Yong Chimpanzee Rescue Center, IDA-Africa, Portland, 97204 Oregon, USA.
George M ShawDepartment of Medicine, University of Pennsylvania, Philadelphia, 19104 Pennsylvania, USA.
Frederic D BushmanDepartment of Microbiology, University of Pennsylvania, Philadelphia, 19104 Pennsylvania, USA.
Dustin BrissonDepartment of Biology, University of Pennsylvania, Philadelphia, 19104 Pennsylvania, USA.
Julian C RaynerMalaria Programme, Wellcome Trust Sanger Institute, Wellcome Genome Campus, CB10 1SA Cambridge, UK.
Paul M SharpInstitute of Evolutionary Biology and Centre for Immunity, Infection and Evolution, University of Edinburgh, EH9 3FL Edinburgh, UK.
Beatrice H HahnDepartment of Medicine, University of Pennsylvania, Philadelphia, 19104 Pennsylvania, USA.
University of Pennsylvania · USUniversity of Edinburgh · GBInstitut de Recherche pour le Développement · FRUniversité de Montpellier · FRWellcome Sanger Institute · GB

Funding

Virus & Reservoirs CoreP30AI045008 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ROBERT GROSS · 1999 to 2026
$78.6M
Natural SIV Reservoirs and Human Zoonotic RiskR37AI050529 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2008 to 2017
$5.7M
Great Ape Reservoirs of Human MalariaR01AI091595 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2011 to 2019
$5.3M
PARASITOLOGY: MODERN APPROACHEST32AI007532 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HERBERT, DE'BROSKI R · 1998 to 2022
$5.0M
Phylogeographic dynamics of a vector and pathogen in a natural environmentR01AI097137 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI BRISSON, DUSTIN · 2012 to 2016
$1.9M
NIAID NIH HHS P30 AI045008NIAID NIH HHS R01 AI091595NIAID NIH HHS R01 AI097137NIAID NIH HHS R37 AI050529NIAID NIH HHS T32 AI007532Wellcome TrustWellcome Trust 098051
6 · The paper itself

Abstract

African apes harbour at least six Plasmodium species of the subgenus Laverania, one of which gave rise to human Plasmodium falciparum. Here we use a selective amplification strategy to sequence the genome of chimpanzee parasites classified as Plasmodium reichenowi and Plasmodium gaboni based on the subgenomic fragments. Genome-wide analyses show that these parasites indeed represent distinct species, with no evidence of cross-species mating. Both P. reichenowi and P. gaboni are 10-fold more diverse than P. falciparum, indicating a very recent origin of the human parasite. We also find a remarkable Laverania-specific expansion of a multigene family involved in erythrocyte remodelling, and show that a short region on chromosome 4, which encodes two essential invasion genes, was horizontally transferred into a recent P. falciparum ancestor. Our results validate the selective amplification strategy for characterizing cryptic pathogen species, and reveal evolutionary events that likely predisposed the precursor of P. falciparum to colonize humans.

Indexed as

Evolution, MolecularAnimalsBiological EvolutionGenetic VariationGenome, ProtozoanHumansMalaria, FalciparumMultigene FamilyPan troglodytesPhylogenyPlasmodiumPlasmodium falciparumReal-Time Polymerase Chain Reaction

Identifiers

PMID27002652
PMCPMC4804174
OpenAlexW2309804881

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.