Evidence map›Paper›PMID 27002638›Full record

ArticleBiopreservation and biobanking2016

Establishment and Maintenance of Primary Fibroblast Repositories for Rare Diseases-Friedreich's Ataxia Example.

Yanjie Li, Urszula Polak, Amanda D Clark, Angela D Bhalla, Yu-Yun Chen, Jixue Li, Jennifer Farmer, Lauren Seyer, David Lynch, Jill S Butler and 1 more

Abstract read
In one paragraph

Article in Biopreservation and biobanking, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 29 citations in OpenAlex.

  1. Pooled it
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  11. Perspectives on current models of Friedreich's ataxia.Frontiers in cell and developmental biology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Yanjie Li1 Department of Biochemistry and Molecular Genetics, UAB Stem Cell Institute, University of Alabama at Birmingham , Birmingham, Alabama.
Urszula Polak2 Department of Molecular Carcinogenesis, Center for Cancer Epigenetics, University of Texas MD Anderson Cancer Center , Smithville, Texas.
Amanda D Clark1 Department of Biochemistry and Molecular Genetics, UAB Stem Cell Institute, University of Alabama at Birmingham , Birmingham, Alabama.
Angela D Bhalla1 Department of Biochemistry and Molecular Genetics, UAB Stem Cell Institute, University of Alabama at Birmingham , Birmingham, Alabama.
Yu-Yun Chen1 Department of Biochemistry and Molecular Genetics, UAB Stem Cell Institute, University of Alabama at Birmingham , Birmingham, Alabama.
Jixue Li1 Department of Biochemistry and Molecular Genetics, UAB Stem Cell Institute, University of Alabama at Birmingham , Birmingham, Alabama.
Jennifer Farmer3 Division of Neurology and Pediatrics, Children's Hospital of Philadelphia , Philadelphia, Pennsylvania.
Lauren Seyer3 Division of Neurology and Pediatrics, Children's Hospital of Philadelphia , Philadelphia, Pennsylvania.
David Lynch3 Division of Neurology and Pediatrics, Children's Hospital of Philadelphia , Philadelphia, Pennsylvania.
Jill S Butler1 Department of Biochemistry and Molecular Genetics, UAB Stem Cell Institute, University of Alabama at Birmingham , Birmingham, Alabama.
Marek Napierala1 Department of Biochemistry and Molecular Genetics, UAB Stem Cell Institute, University of Alabama at Birmingham , Birmingham, Alabama.
Children's Hospital of Philadelphia · USInstitute of Bioorganic Chemistry, Polish Academy of Sciences · PL

Funding

GAA REPEATS INDUCED EPIGENETIC SILENCING IN FRIEDREICH'S ATAXIAR01NS081366 · NINDS · UT SOUTHWESTERN MEDICAL CENTER · PI NAPIERALA, MAREK · 2012 to 2021
$3.7M
NINDS NIH HHS R01 NS081366
6 · The paper itself

Abstract

Friedreich's ataxia (FRDA) represents a rare neurodegenerative disease caused by expansion of GAA trinucleotide repeats in the first intron of the FXN gene. The number of GAA repeats in FRDA patients varies from approximately 60 to <1000 and is tightly correlated with age of onset and severity of the disease symptoms. The heterogeneity of Friedreich's ataxia stresses the need for a large cohort of patient samples to conduct studies addressing the mechanism of disease pathogenesis or evaluate novel therapeutic candidates. Herein, we report the establishment and characterization of an FRDA fibroblast repository, which currently includes 50 primary cell lines derived from FRDA patients and seven lines from mutation carriers. These cells are also a source for generating induced pluripotent stem cell (iPSC) lines by reprogramming, as well as disease-relevant neuronal, cardiac, and pancreatic cells that can then be differentiated from the iPSCs. All FRDA and carrier lines are derived using a standard operating procedure and characterized to confirm mutation status, as well as expression of FXN mRNA and protein. Consideration and significance of creating disease-focused cell line and tissue repositories, especially in the context of rare and heterogeneous disorders, are presented. Although the economic aspect of creating and maintaining such repositories is important, the benefits of easy access to a collection of well-characterized cell lines for the purpose of drug discovery or disease mechanism studies overshadow the associated costs. Importantly, all FRDA fibroblast cell lines collected in our repository are available to the scientific community.

Indexed as

Biological Specimen BanksCell DifferentiationCell LineCryopreservationFibroblastsFrataxinFriedreich AtaxiaHumansInduced Pluripotent Stem CellsIron-Binding ProteinsMutationRare DiseasesSpecimen HandlingFrataxinIron-Binding Proteins

Identifiers

PMID27002638
PMCPMC4991587
OpenAlexW2310399998

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.