Evidence map›Paper›PMID 27002156›Full record

ArticleThe Journal of biological chemistry2016

Translation Control of Swarming Proficiency in Bacillus subtilis by 5-Amino-pentanolylated Elongation Factor P.

Andrei Rajkovic, Katherine R Hummels, Anne Witzky, Sarah Erickson, Philip R Gafken, Julian P Whitelegge, Kym F Faull, Daniel B Kearns, Michael Ibba

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
7.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 68 citations in OpenAlex.

  1. Translation factors that keep the ribosome Pro-active.Microbiology and molecular biology reviews : MMBR · 2026
    Review
  2. Pleiotropic roles of elongation factor P inMicrobiology spectrum · 2026
    Article
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  14. YfmR is a translation factor that prevents ribosome stalling and cell death in the absence of EF-P.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  15. Article
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  19. Article
  20. Functions and Regulation of Translation Elongation Factors.Frontiers in molecular biosciences · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Andrei RajkovicFrom the Molecular, Cellular, and Developmental Biology Program and Center for RNA Biology and.
Katherine R Hummelsthe Department of Biology, Indiana University, Bloomington, Indiana 47305.
Anne WitzkyDepartments of Molecular Genetics.
Sarah EricksonChemistry, and.
Philip R Gafkenthe Proteomics Facility, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, and.
Julian P Whiteleggethe Pasarow Mass Spectrometry Laboratory, Semel Institute for Neuroscience and Human Behavior, and Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, UCLA, Los Angeles, California 90095.
Kym F Faullthe Pasarow Mass Spectrometry Laboratory, Semel Institute for Neuroscience and Human Behavior, and Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, UCLA, Los Angeles, California 90095.
Daniel B Kearnsthe Department of Biology, Indiana University, Bloomington, Indiana 47305.
Michael IbbaFrom the Molecular, Cellular, and Developmental Biology Program and Center for RNA Biology and Microbiology, Ohio State University, Columbus, Ohio 43210, ibba.1@osu.edu.
The Ohio State University · USIndiana University Bloomington · USFred Hutch Cancer Center · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
Transgenic & Knock-out MouseP30DK063491 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PETER J TONTONOZ · 2003 to 2026
$40.4M
TRAINING IN GENETICST32GM007757 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI KUMAR, JUSTIN P · 1985 to 2014
$8.1M
Mechanisms of translational controlR01GM065183 · NIGMS · OHIO STATE UNIVERSITY · PI DUNHAM, CHRISTINE M, FREDRICK, KURT L · 2003 to 2020
$4.9M
The mechanism of bistable motility gene expression in Bacillus subtilis.R01GM093030 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI KEARNS, DANIEL B · 2010 to 2018
$2.6M
Cellular, molecular, and biochemical sciences training grantT32GM086252 · NIGMS · OHIO STATE UNIVERSITY · PI JACKMAN, JANE ELIZABETH, MUSIER-FORSYTH, KARIN M · 2011 to 2020
$2.0M
NCI NIH HHS P30 CA015704NIDDK NIH HHS P30 DK063491NIGMS NIH HHS R01 GM065183NIGMS NIH HHS R01 GM093030NIGMS NIH HHS T32 GM007757NIGMS NIH HHS T32 GM086252
6 · The paper itself

Abstract

Elongation factor P (EF-P) accelerates diprolyl synthesis and requires a posttranslational modification to maintain proteostasis. Two phylogenetically distinct EF-P modification pathways have been described and are encoded in the majority of Gram-negative bacteria, but neither is present in Gram-positive bacteria. Prior work suggested that the EF-P-encoding gene (efp) primarily supports Bacillus subtilis swarming differentiation, whereas EF-P in Gram-negative bacteria has a more global housekeeping role, prompting our investigation to determine whether EF-P is modified and how it impacts gene expression in motile cells. We identified a 5-aminopentanol moiety attached to Lys(32) of B. subtilis EF-P that is required for swarming motility. A fluorescent in vivo B. subtilis reporter system identified peptide motifs whose efficient synthesis was most dependent on 5-aminopentanol EF-P. Examination of the B. subtilis genome sequence showed that these EF-P-dependent peptide motifs were represented in flagellar genes. Taken together, these data show that, in B. subtilis, a previously uncharacterized posttranslational modification of EF-P can modulate the synthesis of specific diprolyl motifs present in proteins required for swarming motility.

Indexed as

Amino Acid MotifsBacillus subtilisBacterial ProteinsGenes, BacterialLysineMovementPentanolsPeptide Elongation FactorsProtein Processing, Post-TranslationalRecombinant ProteinsBacterial Proteinsfactor EF-PLysinePentanolsPeptide Elongation FactorsRecombinant ProteinsBacilluscell motilitymicrobiologyposttranslational modificationprotein synthesistranslation elongation factor

Identifiers

PMID27002156
PMCPMC4900249
OpenAlexW2305154643

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.