Evidence map›Paper›PMID 27001814›Full record

ArticleAntimicrobial agents and chemotherapy2016

Little Polymorphism at the K13 Propeller Locus in Worldwide Plasmodium falciparum Populations Prior to the Introduction of Artemisinin Combination Therapies.

Toshihiro Mita, Richard Culleton, Nobuyuki Takahashi, Masatoshi Nakamura, Takahiro Tsukahara, Carol W Hunja, Zin Zayar Win, Wah Win Htike, Aung S Marma, Lek Dysoley and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

  1. Pooled it
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  5. Article
  6. Article
  7. The Diversity of theAntimicrobial agents and chemotherapy · 2019
    Article
  8. Evolution and Genetic Diversity of theAntimicrobial agents and chemotherapy · 2019
    Article
  9. Article
  10. Article
  11. Artemisinin Resistance Outside of Southeast Asia.The American journal of tropical medicine and hygiene · 2018
    Article
  12. Absence ofThe American journal of tropical medicine and hygiene · 2018
    Article
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 10 institutions in 6 countries.

Toshihiro MitaDepartment of Molecular and Cellular Parasitology, Juntendo University School of Medicine, Tokyo, Japan Department of International Affairs and Tropical Medicine, Tokyo Women's Medical University, Tokyo, Japan tmita@juntendo.ac.jp.
Richard CulletonMalaria Unit, Department of Pathology, Institute of Tropical Medicine, Nagasaki University, Nagasaki, Japan.
Nobuyuki TakahashiDepartment of International Affairs and Tropical Medicine, Tokyo Women's Medical University, Tokyo, Japan.
Masatoshi NakamuraDepartment of Tropical Medicine and Parasitology, Dokkyo Medical University, Tochigi, Japan.
Takahiro TsukaharaDepartment of International Affairs and Tropical Medicine, Tokyo Women's Medical University, Tokyo, Japan.
Carol W HunjaMalaria Unit, Department of Pathology, Institute of Tropical Medicine, Nagasaki University, Nagasaki, Japan Centre for Research in Therapeutic Sciences, Strathmore University, Nairobi, Kenya South Eastern Kenya University, Kitui, Kenya.
Zin Zayar WinDepartment of Molecular and Cellular Parasitology, Juntendo University School of Medicine, Tokyo, Japan Department of Biomedical Chemistry, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Wah Win HtikeDepartment of Microbiology, The University of Medicine 1, Yangon, Myanmar.
Aung S MarmaDepartment of International Affairs and Tropical Medicine, Tokyo Women's Medical University, Tokyo, Japan.
Lek DysoleyDepartment of International Affairs and Tropical Medicine, Tokyo Women's Medical University, Tokyo, Japan.
Mathieu NdoungaLaboratoire de Pharmacologie, Centre d'Etudes sur les Ressources Vegetales, Brazzaville, Republic of Congo.
Mawuli DzodzomenyoDepartment of International Affairs and Tropical Medicine, Tokyo Women's Medical University, Tokyo, Japan.
Willis S AkhwaleDepartment of International Affairs and Tropical Medicine, Tokyo Women's Medical University, Tokyo, Japan.
Jun KobayashiDepartment of Global Health, School of Health Sciences, University of the Ryukyus, Japan.
Haruki UemuraDepartment of Protozoology, Institute of Tropical Medicine, Nagasaki University, Nagasaki, Japan.
Akira KanekoDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, Sweden Department of Parasitology, Osaka City University Graduate School of Medicine, Osaka, Japan.
Francis HombhanjeCentre for Health Research and Diagnostics, Divine Word University, Madang, Papua New Guinea.
Marcelo U FerreiraDepartment of Parasitology, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil.
Anders BjörkmanDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, Sweden.
Hiroyoshi EndoDepartment of International Affairs and Tropical Medicine, Tokyo Women's Medical University, Tokyo, Japan.
Jun OhashiDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
Tokyo Women's Medical University · JPNagasaki University · JPThe University of Tokyo · JPDivine Word University · PGDokkyo Medical University · JPKarolinska Institutet · SEOsaka City University · JPUniversidade de São Paulo · BRUniversity Of Medicine 1 Yangon · MMUniversity of the Ryukyus University Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The emergence and spread of artemisinin-resistant Plasmodium falciparum is of huge concern for the global effort toward malaria control and elimination. Artemisinin resistance, defined as a delayed time to parasite clearance following administration of artemisinin, is associated with mutations in the Pfkelch13 gene of resistant parasites. To date, as many as 60 nonsynonymous mutations have been identified in this gene, but whether these mutations have been selected by artemisinin usage or merely reflect natural polymorphism independent of selection is currently unknown. To clarify this, we sequenced the Pfkelch13 propeller domain in 581 isolates collected before (420 isolates) and after (161 isolates) the implementation of artemisinin combination therapies (ACTs), from various regions of endemicity worldwide. Nonsynonymous mutations were observed in 1% of parasites isolated prior to the introduction of ACTs. Frequencies of mutant isolates, nucleotide diversity, and haplotype diversity were significantly higher in the parasites isolated from populations exposed to artemisinin than in those from populations that had not been exposed to the drug. In the artemisinin-exposed population, a significant excess of dN compared to dS was observed, suggesting the presence of positive selection. In contrast, pairwise comparison of dN and dS and the McDonald and Kreitman test indicate that purifying selection acts on the Pfkelch13 propeller domain in populations not exposed to ACTs. These population genetic analyses reveal a low baseline of Pfkelch13 polymorphism, probably due to purifying selection in the absence of artemisinin selection. In contrast, various Pfkelch13 mutations have been selected under artemisinin pressure.

Indexed as

AntimalarialsArtemisininsGenetics, PopulationHumansMalaria, FalciparumMutationPlasmodium falciparumPolymorphism, GeneticAntimalarialsArtemisinins

Identifiers

PMID27001814
PMCPMC4879392
OpenAlexW2311216236

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.