Evidence map›Paper›PMID 27001518›Full record

ArticleNucleic acids research2016

Inducible DamID systems for genomic mapping of chromatin proteins in Drosophila.

Alexey V Pindyurin, Ludo Pagie, Elena N Kozhevnikova, Joris van Arensbergen, Bas van Steensel

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Article
  3. Epigenetic Regulation in Drosophila Tumor Models.Advances in experimental medicine and biology · 2025
    Review
  4. Article
  5. Life science alliance · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Targeted DamID inScience advances · 2022
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. DamID as a versatile tool for understanding gene regulation.Development (Cambridge, England) · 2019
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Alexey V PindyurinDivision of Gene Regulation, Netherlands Cancer Institute, 1066 CX Amsterdam, the Netherlands Institute of Molecular and Cellular Biology SB RAS, Novosibirsk 630090, Russia a.pindyurin@mcb.nsc.ru.
Ludo PagieDivision of Gene Regulation, Netherlands Cancer Institute, 1066 CX Amsterdam, the Netherlands.
Elena N KozhevnikovaInstitute of Molecular and Cellular Biology SB RAS, Novosibirsk 630090, Russia.
Joris van ArensbergenDivision of Gene Regulation, Netherlands Cancer Institute, 1066 CX Amsterdam, the Netherlands.
Bas van SteenselDivision of Gene Regulation, Netherlands Cancer Institute, 1066 CX Amsterdam, the Netherlands b.v.steensel@nki.nl.
The Netherlands Cancer Institute · NLInstitute of Molecular and Cell Biology · RU

Funding

European Research Council 293662
6 · The paper itself

Abstract

Dam identification (DamID) is a powerful technique to generate genome-wide maps of chromatin protein binding. Due to its high sensitivity, it is particularly suited to study the genome interactions of chromatin proteins in small tissue samples in model organisms such as Drosophila Here, we report an intein-based approach to tune the expression level of Dam and Dam-fusion proteins in Drosophila by addition of a ligand to fly food. This helps to suppress possible toxic effects of Dam. In addition, we describe a strategy for genetically controlled expression of Dam in a specific cell type in complex tissues. We demonstrate the utility of the latter by generating a glia-specific map of Polycomb in small samples of brain tissue. These new DamID tools will be valuable for the mapping of binding patterns of chromatin proteins in Drosophila tissues and especially in cell lineages.

Indexed as

Chromosome MappingAnimalsAnimals, Genetically ModifiedBinding SitesCell LineageChromatinDNA MethylationDrosophila melanogasterGene Expression RegulationLigandsNeurogliaOrgan SpecificityProtein BindingProtein BiosynthesisSite-Specific DNA-Methyltransferase (Adenine-Specific)ChromatinDam methyltransferaseLigandsSite-Specific DNA-Methyltransferase (Adenine-Specific)

Identifiers

PMID27001518
PMCPMC4937306
OpenAlexW2308681756

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.