Evidence map›Paper›PMID 27001510›Full record

ArticleNucleic acids research2016

Involvement of budding yeast Rad5 in translesion DNA synthesis through physical interaction with Rev1.

Xin Xu, Aiyang Lin, Cuiyan Zhou, Susan R Blackwell, Yiran Zhang, Zihao Wang, Qianqian Feng, Ruifang Guan, Michelle D Hanna, Zhucheng Chen and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 79 citations in OpenAlex.

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  8. Polymorphism ofInternational journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Xin XuCollege of Life Sciences, Capital Normal University, Beijing 100048, China.
Aiyang LinCollege of Life Sciences, Capital Normal University, Beijing 100048, China.
Cuiyan ZhouCenter for Structure Biology, School of Life Science, Tsinghua University, Beijing 100084, China.
Susan R BlackwellDepartment of Microbiology and Immunology, University of Saskatchewan, Saskatoon, SK S7N 5E5, Canada.
Yiran ZhangCollege of Life Sciences, Capital Normal University, Beijing 100048, China.
Zihao WangCollege of Life Sciences, Capital Normal University, Beijing 100048, China.
Qianqian FengCollege of Life Sciences, Capital Normal University, Beijing 100048, China.
Ruifang GuanCenter for Structure Biology, School of Life Science, Tsinghua University, Beijing 100084, China.
Michelle D HannaDepartment of Microbiology and Immunology, University of Saskatchewan, Saskatoon, SK S7N 5E5, Canada.
Zhucheng ChenCenter for Structure Biology, School of Life Science, Tsinghua University, Beijing 100084, China zhucheng_chen@tsinghua.edu.cn.
Wei XiaoCollege of Life Sciences, Capital Normal University, Beijing 100048, China Department of Microbiology and Immunology, University of Saskatchewan, Saskatoon, SK S7N 5E5, Canada wei.xiao@usask.ca.
Capital Normal University · CNTsinghua University · CNUniversity of Saskatchewan · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA damage tolerance (DDT) is responsible for genomic stability and cell viability by bypassing the replication block. In Saccharomyces cerevisiae DDT employs two parallel branch pathways to bypass the DNA lesion, namely translesion DNA synthesis (TLS) and error-free lesion bypass, which are mediated by sequential modifications of PCNA. Rad5 has been placed in the error-free branch of DDT because it contains an E3 ligase domain required for PCNA polyubiquitination. Rad5 is a multi-functional protein and may also play a role in TLS, since it interacts with the TLS polymerase Rev1. In this study we mapped the Rev1-interaction domain in Rad5 to the amino acid resolution and demonstrated that Rad5 is indeed involved in TLS possibly through recruitment of Rev1. Genetic analyses show that the dual functions of Rad5 can be separated and reconstituted. Crystal structure analysis of the Rad5-Rev1 interaction reveals a consensus RFF motif in the Rad5 N-terminus that binds to a hydrophobic pocket within the C-terminal domain of Rev1 that is highly conserved in eukaryotes. This study indicates that Rad5 plays a critical role in pathway choice between TLS and error-free DDT.

Indexed as

DNA ReplicationAmino Acid SequenceDNA DamageDNA HelicasesEpistasis, GeneticModels, MolecularMutationNucleotidyltransferasesProtein BindingProtein ConformationProtein Interaction Domains and MotifsSaccharomyces cerevisiae ProteinsSaccharomycetalesDNA HelicasesNucleotidyltransferasesSaccharomyces cerevisiae Proteins

Identifiers

PMID27001510
PMCPMC4914093
OpenAlexW2308946929

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.