Evidence map›Paper›PMID 27001450›Full record

ArticleGene2016

Investigating direct interaction between Escherichia coli topoisomerase I and RecA.

Srikanth Banda, Purushottam Babu Tiwari, Yesim Darici, Yuk-Ching Tse-Dinh

Open access · greenAbstract read
In one paragraph

Article in Gene, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. The Role of Topoisomerase II in DNA Repair and Recombination inInternational journal of molecular sciences · 2021
    Article
  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Srikanth Banda *Department of Chemistry and Biochemistry, Florida International University, Miami, Florida, USA.
Purushottam Babu Tiwari *Department of Oncology, Georgetown University, Washington, District of Columbia, USA.
Yesim DariciDepartment of Physics, Florida International University, Miami, Florida, USA.
Yuk-Ching Tse-DinhDepartment of Chemistry and Biochemistry, Florida International University, Miami, Florida, USA.
Florida International University · USGeorgetown University · US

Funding

Tissue Culture Shared ResourceP30CA051008 · NCI · GEORGETOWN UNIVERSITY · PI STEPHEN W BYERS · 1990 to 2026
$71.5M
Supplement for undergraduate research participant to promote diversityR01GM054226 · NIGMS · NEW YORK MEDICAL COLLEGE · PI TSE-DINH, YUK-CHING · 1996 to 2020
$4.6M
Bacterial cell killing topoisomerase I--DNA lesionR01AI069313 · NIAID · NEW YORK MEDICAL COLLEGE · PI TSE-DINH, YUK-CHING · 2006 to 2014
$3.4M
NCI NIH HHS P30 CA051008NCI NIH HHS P30CA51008NIAID NIH HHS R01 AI069313NIAID NIH HHS R01AI069313NIGMS NIH HHS R01 GM054226NIGMS NIH HHS R01GM054226
6 · The paper itself

Abstract

Protein-protein interactions are of special importance in cellular processes, including replication, transcription, recombination, and repair. Escherichia coli topoisomerase I (EcTOP1) is primarily involved in the relaxation of negative DNA supercoiling. E. coli RecA, the key protein for homologous recombination and SOS DNA-damage response, has been shown to stimulate the relaxation activity of EcTOP1. The evidence for their direct protein-protein interaction has not been previously established. We report here the direct physical interaction between E. coli RecA and topoisomerase I. We demonstrated the RecA-topoisomerase I interaction via pull-down assays, and surface plasmon resonance measurements. Molecular docking supports the observation that the interaction involves the topoisomerase I N-terminal domains that form the active site. Our results from pull-down assays showed that ATP, although not required, enhances the RecA-EcTOP1 interaction. We propose that E. coli RecA physically interacts with topoisomerase I to modulate the chromosomal DNA supercoiling.

Indexed as

Catalytic DomainDNA, SuperhelicalDNA Topoisomerases, Type IEscherichia coliHomologous RecombinationMolecular Docking SimulationRec A RecombinasesSOS Response, GeneticsSurface Plasmon ResonanceDNA, SuperhelicalDNA Topoisomerases, Type IRec A RecombinasesDNA topoisomerase IMolecular dockingProtein–protein interactionsPull-down assayRecASPR

Identifiers

PMID27001450
PMCPMC4838544
OpenAlexW2306620674

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.