Evidence map›Paper›PMID 27001106›Full record

ArticleBMC genomics2016

Identification and functional analyses of sex determination genes in the sexually dimorphic stag beetle Cyclommatus metallifer.

Hiroki Gotoh, Robert A Zinna, Ian Warren, Michael DeNieu, Teruyuki Niimi, Ian Dworkin, Douglas J Emlen, Toru Miura, Laura C Lavine

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 41 citations in OpenAlex.

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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Hiroki GotohDepartment of Entomology, Washington State University, Pullman, WA, 99164, USA.
Robert A ZinnaDepartment of Entomology, Washington State University, Pullman, WA, 99164, USA.
Ian WarrenDepartment of Entomology, Washington State University, Pullman, WA, 99164, USA.
Michael DeNieuDepartment of Zoology, Michigan State University, East Lansing, MI, 48824, USA.
Teruyuki NiimiGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Aichi, 464-8601, Japan.
Ian DworkinDepartment of Zoology, Michigan State University, East Lansing, MI, 48824, USA.
Douglas J EmlenDivision of Biological Sciences, University of Montana-Missoula, Missoula, MT, 59812, USA.
Toru MiuraGraduate School of Environmental Science, Hokkaido University, Sapporo, Hokkaido, 060-0810, Japan.
Laura C LavineDepartment of Entomology, Washington State University, Pullman, WA, 99164, USA. lavine@wsu.edu.
Washington State University · USMichigan State University · USHokkaido University · JPNational Institute for Basic Biology · JPUniversity of Montana · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGenes in the sex determination pathway are important regulators of sexually dimorphic animal traits, including the elaborate and exaggerated male ornaments and weapons of sexual selection. In this study, we identified and functionally analyzed members of the sex determination gene family in the golden metallic stag beetle Cyclommatus metallifer, which exhibits extreme differences in mandible size between males and females.

resultsWe constructed a C. metallifer transcriptomic database from larval and prepupal developmental stages and tissues of both males and females. Using Roche 454 pyrosequencing, we generated a de novo assembled database from a total of 1,223,516 raw reads, which resulted in 14,565 isotigs (putative transcript isoforms) contained in 10,794 isogroups (putative identified genes). We queried this database for C. metallifer conserved sex determination genes and identified 14 candidate sex determination pathway genes. We then characterized the roles of several of these genes in development of extreme sexual dimorphic traits in this species. We performed molecular expression analyses with RT-PCR and functional analyses using RNAi on three C. metallifer candidate genes--Sex-lethal (CmSxl), transformer-2 (Cmtra2), and intersex (Cmix). No differences in expression pattern were found between the sexes for any of these three genes. In the RNAi gene-knockdown experiments, we found that only the Cmix had any effect on sexually dimorphic morphology, and these mimicked the effects of Cmdsx knockdown in females. Knockdown of CmSxl had no measurable effects on stag beetle phenotype, while knockdown of Cmtra2 resulted in complete lethality at the prepupal period. These results indicate that the roles of CmSxl and Cmtra2 in the sex determination cascade are likely to have diverged in stag beetles when compared to Drosophila. Our results also suggest that Cmix has a conserved role in this pathway. In addition to those three genes, we also performed a more complete functional analysis of the C. metallifer dsx gene (Cmdsx) to identify the isoforms that regulate dimorphism more fully using exon-specific RNAi. We identified a total of 16 alternative splice variants of the Cmdsx gene that code for up to 14 separate exons. Despite the variation in RNA splice products of the Cmdsx gene, only four protein isoforms are predicted. The results of our exon-specific RNAi indicated that the essential CmDsx isoform for postembryonic male differentiation is CmDsxB, whereas postembryonic female specific differentiation is mainly regulated by CmDsxD.

conclusionsTaken together, our results highlight the importance of studying the function of highly conserved sex determination pathways in numerous insect species, especially those with dramatic and exaggerated sexual dimorphism, because conservation in protein structure does not always translate into conservation in downstream function.

Indexed as

Genes, InsectMultigene FamilyAlternative SplicingAnimalsColeopteraExonsFemaleGene Expression Regulation, DevelopmentalGene Knockdown TechniquesMaleProtein IsoformsRNA InterferenceSequence Analysis, RNASex Determination ProcessesSex DifferentiationProtein IsoformsCyclommatus metalliferSex determinationSexual dimorphismSexual selection

Identifiers

PMID27001106
PMCPMC4802893
OpenAlexW2304884279

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.