Evidence map›Paper›PMID 27000065›Full record

ArticleJournal of the American Society of Nephrology : JASN2016

Mitochondrial Pathology and Glycolytic Shift during Proximal Tubule Atrophy after Ischemic AKI.

Rongpei Lan, Hui Geng, Prajjal K Singha, Pothana Saikumar, Erwin P Bottinger, Joel M Weinberg, Manjeri A Venkatachalam

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Society of Nephrology : JASN, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 229 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
229citing papers in PubMed, 1 pooled it
10.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

229 citing papers in PubMed, 1 synthesis or guideline pooled it, 342 citations in OpenAlex.

  1. Preclinical models versus clinical renal ischemia reperfusion injury: A systematic review based on metabolic signatures.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2022
    Pooled it
  2. Review
  3. Article
  4. Article
  5. Review
  6. Renal gluconeogenesis: a key metabolic hub in health and kidney disease.Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association · 2026
    Review
  7. Review
  8. Review
  9. Review
  10. Selective autophagy in kidney health and disease.Nature reviews. Nephrology · 2026
    Review
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. iScience · 2026
    Article
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  20. Article

169 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Rongpei LanDepartment of Pathology, University of Texas Health Science Center, San Antonio, Texas.
Hui GengDepartment of Pathology, University of Texas Health Science Center, San Antonio, Texas.
Prajjal K SinghaDepartment of Pathology, University of Texas Health Science Center, San Antonio, Texas.
Pothana SaikumarDepartment of Pathology, University of Texas Health Science Center, San Antonio, Texas.
Erwin P BottingerDepartment of Medicine, Mount Sinai School of Medicine, New York, New York; and.
Joel M WeinbergDepartment of Medicine, Veterans Affairs Ann Arbor Healthcare System and University of Michigan Medical Center, Ann Arbor, Michigan.
Manjeri A VenkatachalamDepartment of Pathology, University of Texas Health Science Center, San Antonio, Texas; venkatachal@uthscsa.edu.
The University of Texas Health Science Center at San Antonio · USIcahn School of Medicine at Mount Sinai · USVA Ann Arbor Healthcare System · US

Funding

Genetic Programming in Progressive Renal DiseaseR01DK060043 · NIDDK · YESHIVA UNIVERSITY · PI BOTTINGER, ERWIN P. · 2001 to 2010
$2.9M
PTEN REGULATION DURING ISCHEMIC ACUTE RENAL FAILURER01DK037139 · NIDDK · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI VENKATACHALAM, MANJERI A · 1987 to 2008
$2.3M
Pathogenesis of tubule atrophy and failed recovery after acute kidney injuryR01DK104128 · NIDDK · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI VENKATACHALAM, MANJERI A · 2016 to 2019
$1.4M
Novel Forms of Cell Death During Acute Kidney InjuryI01BX002367 · VA · VETERANS HEALTH ADMINISTRATION · PI WEINBERG, JOEL M. · 2015 to 2019
–
BLRD VA I01 BX002367NIDDK NIH HHS R01 DK037139NIDDK NIH HHS R01 DK060043NIDDK NIH HHS R01 DK104128
6 · The paper itself

Abstract

During recovery by regeneration after AKI, proximal tubule cells can fail to redifferentiate, undergo premature growth arrest, and become atrophic. The atrophic tubules display pathologically persistent signaling increases that trigger production of profibrotic peptides, proliferation of interstitial fibroblasts, and fibrosis. We studied proximal tubules after ischemia-reperfusion injury (IRI) to characterize possible mitochondrial pathologies and alterations of critical enzymes that govern energy metabolism. In rat kidneys, tubules undergoing atrophy late after IRI but not normally recovering tubules showed greatly reduced mitochondrial number, with rounded profiles, and large autophagolysosomes. Studies after IRI of kidneys in mice, done in parallel, showed large scale loss of the oxidant-sensitive mitochondrial protein Mpv17L. Renal expression of hypoxia markers also increased after IRI. During early and late reperfusion after IRI, kidneys exhibited increased lactate and pyruvate content and hexokinase activity, which are indicators of glycolysis. Furthermore, normally regenerating tubules as well as tubules undergoing atrophy exhibited increased glycolytic enzyme expression and inhibitory phosphorylation of pyruvate dehydrogenase. TGF-β antagonism prevented these effects. Our data show that the metabolic switch occurred early during regeneration after injury and was reversed during normal tubule recovery but persisted and became progressively more severe in tubule cells that failed to redifferentiate. In conclusion, irreversibility of the metabolic switch, taking place in the context of hypoxia, high TGF-β signaling and depletion of mitochondria characterizes the development of atrophy in proximal tubule cells and may contribute to the renal pathology after AKI.

Indexed as

GlycolysisAcute Kidney InjuryAnimalsAtrophyIschemiaKidneyKidney Tubules, ProximalMiceMice, Inbred C57BLMitochondriaMitochondrial DiseasesRatsRats, Sprague-Dawleyischemia-reperfusionmetabolismmitochondriapathologyproximal tubule

Identifiers

PMID27000065
PMCPMC5084876
OpenAlexW2305012287

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.