Evidence map›Paper›PMID 26999814›Full record

ArticlePloS one2016

Nuclear Localization of the Autism Candidate Gene Neurobeachin and Functional Interaction with the NOTCH1 Intracellular Domain Indicate a Role in Regulating Transcription.

Krizia Tuand, Pieter Stijnen, Karolien Volders, Jeroen Declercq, Kim Nuytens, Sandra Meulemans, John Creemers

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Frontiers in neuroscience · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Autism Spectrum Disorder-Related Syndromes: Modeling withInternational journal of molecular sciences · 2019
    Review
  12. Article
  13. LRBA in the endomembrane system.Colombia medica (Cali, Colombia) · 2018
    Review
  14. Article
  15. Review
  16. Article
  17. In Search of Autism's Roots.PLoS biology · 2016
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Krizia TuandDepartment of Human Genetics, KU Leuven, Leuven, Belgium.
Pieter StijnenDepartment of Human Genetics, KU Leuven, Leuven, Belgium.
Karolien VoldersDepartment of Human Genetics, KU Leuven, Leuven, Belgium.
Jeroen DeclercqDepartment of Human Genetics, KU Leuven, Leuven, Belgium.
Kim NuytensDepartment of Human Genetics, KU Leuven, Leuven, Belgium.
Sandra MeulemansDepartment of Human Genetics, KU Leuven, Leuven, Belgium.
John CreemersDepartment of Human Genetics, KU Leuven, Leuven, Belgium.
KU Leuven · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundNeurobeachin (NBEA) is an autism spectrum disorders (ASD) candidate gene. NBEA deficiency affects regulated secretion, receptor trafficking, synaptic architecture and protein kinase A (PKA)-mediated phosphorylation. NBEA is a large multidomain scaffolding protein. From N- to C-terminus, NBEA has a concanavalin A-like lectin domain flanked by armadillo repeats (ACA), an A-kinase anchoring protein domain that can bind to PKA, a domain of unknown function (DUF1088) and a BEACH domain, preceded by a pleckstrin homology-like domain and followed by WD40 repeats (PBW). Although most of these domains mediate protein-protein interactions, no interaction screen has yet been performed.

methodsYeast two-hybrid screens with the ACA and PBW domain modules of NBEA gave a list of interaction partners, which were analyzed for Gene Ontology (GO) enrichment. Neuro-2a cells were used for confocal microscopy and nuclear extraction analysis. NOTCH-mediated transcription was studied with luciferase reporter assays and qRT-PCR, combined with NBEA knockdown or overexpression.

resultsBoth domain modules showed a GO enrichment for the nucleus. PBW almost exclusively interacted with transcription regulators, while ACA interacted with a number of PKA substrates. NBEA was partially localized in the nucleus of Neuro-2a cells, albeit much less than in the cytoplasm. A nuclear localization signal was found in the DUF1088 domain, which was shown to contribute to the nuclear localization of an EGFP-DPBW fusion protein. Yeast two-hybrid identified the Notch1 intracellular domain as a physical interactor of the PBW domain and a role for NBEA as a negative regulator in Notch-mediated transcription was demonstrated.

conclusionDefining novel interaction partners of conserved NBEA domain modules identified a role for NBEA as transcriptional regulator in the nucleus. The physical interaction of NBEA with NOTCH1 is most relevant for ASD pathogenesis because NOTCH signaling is essential for neural development.

Indexed as

Genetic Association StudiesTranscription, GeneticAnimalsAutistic DisorderCarrier ProteinsCell LineCell NucleusGene Knockdown TechniquesHumansMembrane ProteinsMiceNerve Tissue ProteinsNuclear Localization SignalsProtein BindingProtein Structure, TertiaryProtein TransportCarrier ProteinsMembrane ProteinsNbea protein, mouseNerve Tissue ProteinsNotch1 protein, mouseNuclear Localization SignalsReceptor, Notch1

Identifiers

PMID26999814
PMCPMC4801420
OpenAlexW2311599414

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.