Evidence map›Paper›PMID 26999799›Full record

ArticleeLife2016

A Mammalian enhancer trap resource for discovering and manipulating neuronal cell types.

Yasuyuki Shima, Ken Sugino, Chris Martin Hempel, Masami Shima, Praveen Taneja, James B Bullis, Sonam Mehta, Carlos Lois, Sacha B Nelson

Open access · goldAbstract read
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
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  6. Article
  7. Article
  8. An enhancer trap system to track developmental dynamics in Marchantia polymorpha.The Plant journal : for cell and molecular biology · 2023
    Article
  9. Review
  10. Molecular therapy. Nucleic acids · 2023
    Article
  11. Review
  12. Review
  13. The Annotation of Zebrafish Enhancer Trap Lines Generated withCurrent issues in molecular biology · 2022
    Article
  14. Article
  15. In Search of Molecular Markers for Cerebellar Neurons.International journal of molecular sciences · 2021
    Review
  16. Article
  17. Deletion ofeLife · 2020
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Yasuyuki ShimaDepartment of Biology and National Center for Behavioral Genomics, Brandeis University, Waltham, United States.
Ken SuginoJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, United States.
Chris Martin HempelDepartment of Biology and National Center for Behavioral Genomics, Brandeis University, Waltham, United States.
Masami ShimaDepartment of Biology and National Center for Behavioral Genomics, Brandeis University, Waltham, United States.
Praveen TanejaDepartment of Biology and National Center for Behavioral Genomics, Brandeis University, Waltham, United States.
James B BullisDepartment of Biology and National Center for Behavioral Genomics, Brandeis University, Waltham, United States.
Sonam MehtaDepartment of Biology and National Center for Behavioral Genomics, Brandeis University, Waltham, United States.
Carlos LoisDivision of Biology and Biological Engineering, Beckman Institute, California Institute of Technology, Pasadena, United States.
Sacha B NelsonDepartment of Biology and National Center for Behavioral Genomics, Brandeis University, Waltham, United States.ORCID http://orcid.org/0000-0002-0108-8599
Brandeis University · USCalifornia Institute of Technology · USGalenea (United States) · USHoward Hughes Medical Institute · US

Funding

Combining genetics, genomics, and anatomy to classify cell types across mammalsU01MH105949 · NIMH · BRANDEIS UNIVERSITY · PI BEJERANO, GILL, LOIS, CARLOS · 2014 to 2016
$3.4M
A genetic and genomic resource for vision researchR01EY022360 · NEI · BRANDEIS UNIVERSITY · PI NELSON, SACHA B · 2012 to 2016
$2.0M
A Database of Mammalian Neuronal Cell TypesR01NS075007 · NINDS · BRANDEIS UNIVERSITY · PI NELSON, SACHA B · 2012 to 2016
$1.8M
Zeiss Axioimager Z2 Imaging System for Array TomographyS10RR031531 · NCRR · BRANDEIS UNIVERSITY · PI NELSON, SACHA B · 2011 to 2011
$156k
NCRR NIH HHS S10 RR031531NEI NIH HHS EY022360NEI NIH HHS R01 EY022360NIMH NIH HHS MH105949NIMH NIH HHS U01 MH105949NINDS NIH HHS NS075007NINDS NIH HHS R01 NS075007
6 · The paper itself

Abstract

There is a continuing need for driver strains to enable cell-type-specific manipulation in the nervous system. Each cell type expresses a unique set of genes, and recapitulating expression of marker genes by BAC transgenesis or knock-in has generated useful transgenic mouse lines. However, since genes are often expressed in many cell types, many of these lines have relatively broad expression patterns. We report an alternative transgenic approach capturing distal enhancers for more focused expression. We identified an enhancer trap probe often producing restricted reporter expression and developed efficient enhancer trap screening with the PiggyBac transposon. We established more than 200 lines and found many lines that label small subsets of neurons in brain substructures, including known and novel cell types. Images and other information about each line are available online (enhancertrap.bio.brandeis.edu).

Indexed as

AnimalsMiceMice, TransgenicMolecular BiologyNeurobiologyNeuronsStaining and Labelingcell typeenhancer trapmouseneurosciencetransgenic animals

Identifiers

PMID26999799
PMCPMC4846381
OpenAlexW2333696979

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.