Evidence map›Paper›PMID 26999782›Full record

ArticleNature chemical biology2016

Steric trapping reveals a cooperativity network in the intramembrane protease GlpG.

Ruiqiong Guo, Kristen Gaffney, Zhongyu Yang, Miyeon Kim, Suttipun Sungsuwan, Xuefei Huang, Wayne L Hubbell, Heedeok Hong

Abstract read
In one paragraph

Article in Nature chemical biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. bioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Folding speeds of helical membrane proteins.Biochemical Society transactions · 2024
    Review
  12. Topological deep learning based deep mutational scanning.Computers in biology and medicine · 2023
    Article
  13. Article
  14. Thermodynamic analysis of the GASBiophysical journal · 2023
    Article
  15. Review
  16. Review
  17. Review
  18. Untangling the complexity of membrane protein folding.Current opinion in structural biology · 2022
    Review
  19. Lipid bilayer induces contraction of the denatured state ensemble of a helical-bundle membrane protein.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  20. Spiers Memorial Lecture: Analysis andFaraday discussions · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ruiqiong Guo *Department of Chemistry, Michigan State University, East Lansing, MI 48824, USA.
Kristen Gaffney *Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA.
Zhongyu YangJules Stein Eye Institute and Department of Chemistry and Biochemistry, University of California, Los Angeles, CA 90095, USA.
Miyeon KimDepartment of Chemistry, Michigan State University, East Lansing, MI 48824, USA.
Suttipun SungsuwanDepartment of Chemistry, Michigan State University, East Lansing, MI 48824, USA.
Xuefei HuangDepartment of Chemistry, Michigan State University, East Lansing, MI 48824, USA.
Wayne L HubbellJules Stein Eye Institute and Department of Chemistry and Biochemistry, University of California, Los Angeles, CA 90095, USA.
Heedeok HongDepartment of Chemistry, Michigan State University, East Lansing, MI 48824, USA.

Funding

Vision Research Core at UCLAP30EY000331 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Gregory Darin Field, DAVID S WILLIAMS · 1985 to 2026
$16.8M
MOLECULAR BASIS OF MEMBRANE EXCITATIONR01EY005216 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HUBBELL, WAYNE L · 1985 to 2019
$9.8M
Virus-Like Particle Based Antigen Display as Multi-component Anticancer VaccinesR01CA149451 · NCI · MICHIGAN STATE UNIVERSITY · PI HUANG, XUEFEI · 2011 to 2015
$2.4M
Folding and degradation of membrane proteinsR01GM118685 · NIGMS · MICHIGAN STATE UNIVERSITY · PI HONG, HEEDEOK · 2016 to 2020
$1.5M
NCI NIH HHS R01 CA149451NEI NIH HHS P30 EY000331NEI NIH HHS R01 EY005216NEI NIH HHS R01EY005216NIGMS NIH HHS R01 GM118685
6 · The paper itself

Abstract

Membrane proteins are assembled through balanced interactions among proteins, lipids and water. Studying their folding while maintaining the native lipid environment is necessary but challenging. Here we present methods for analyzing key elements of membrane protein folding including thermodynamic stability, compactness of the unfolded state and folding cooperativity under native conditions. The methods are based on steric trapping, which couples the unfolding of a doubly biotinylated protein to the binding of monovalent streptavidin (mSA). We further advanced this technology for general application by developing versatile biotin probes possessing spectroscopic reporters that are sensitized by mSA binding or protein unfolding. By applying these methods to the Escherichia coli intramembrane protease GlpG, we elucidated a widely unraveled unfolded state, subglobal unfolding of the region encompassing the active site, and a network of cooperative and localized interactions to maintain stability. These findings provide crucial insights into the folding energy landscape of membrane proteins.

Indexed as

BiotinDNA, BacterialDNA-Binding ProteinsEndopeptidasesEscherichia coli ProteinsGene Expression Regulation, BacterialMembrane ProteinsModels, MolecularProtein ConformationProtein FoldingSpectrum AnalysisBiotinDNA, BacterialDNA-Binding ProteinsEndopeptidasesEscherichia coli ProteinsGlpG protein, E coliMembrane Proteins

Identifiers

PMID26999782
PMCPMC4837050

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.