Evidence map›Paper›PMID 26999781›Full record

ArticleNature chemical biology2016

Malic enzyme tracers reveal hypoxia-induced switch in adipocyte NADPH pathway usage.

Ling Liu, Supriya Shah, Jing Fan, Junyoung O Park, Kathryn E Wellen, Joshua D Rabinowitz

Abstract read
In one paragraph

Article in Nature chemical biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed.

  1. Article
  2. Review
  3. Oxidative pentose phosphate pathway is required for T cell activation and antitumor immunity.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. In defence of ferroptosis.Signal transduction and targeted therapy · 2025
    Review
  10. NADPCurrent medicinal chemistry · 2025
    Review
  11. Review
  12. Review
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Cellular redox homeostasis maintained by malic enzyme 2 is essential for MYC-driven T cell lymphomagenesis.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  19. Article
  20. Article

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ling LiuLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, USA.
Supriya ShahDepartment of Cancer Biology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Jing FanLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, USA.
Junyoung O ParkLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, USA.ORCID http://orcid.org/0000-0001-9869-8993
Kathryn E WellenDepartment of Cancer Biology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.ORCID http://orcid.org/0000-0002-2281-0042
Joshua D RabinowitzLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, USA.

Funding

VIRAL VECTOR COREP30DK019525 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI MITCHELL A. LAZAR · 1986 to 2026
$48.3M
IMMUNOBIOLOGY OF NORMAL AND NEOPLASTIC LYMPHOCYTEST32CA009140 · NCI · UNIVERSITY OF PENNSYLVANIA · PI Malay Haldar, WARREN S PEAR · 1985 to 2026
$16.1M
Tumor cell metabolism in actionR01CA163591 · NCI · RUTGERS, THE STATE UNIV OF N.J. · PI JOSHUA D RABINOWITZ, Eileen P. White · 2012 to 2026
$7.0M
Mechanisms and consequences of metabolic manipulation by human cytomegalovirusR01AI097382 · NIAID · PRINCETON UNIVERSITY · PI RABINOWITZ, JOSHUA D, SHENK, THOMAS E · 2012 to 2015
$2.2M
Howard Hughes Medical InstituteNCI NIH HHS 5T32CA009140-40NCI NIH HHS R01 CA163591NCI NIH HHS R01CA163591NCI NIH HHS T32 CA009140NIAID NIH HHS R01 AI097382NIAID NIH HHS R01AI097382NIDDK NIH HHS P30 DK019525NIDDK NIH HHS P30DK019525
6 · The paper itself

Abstract

The critical cellular hydride donor NADPH is produced through various means, including the oxidative pentose phosphate pathway (oxPPP), folate metabolism and malic enzyme. In growing cells, it is efficient to produce NADPH via the oxPPP and folate metabolism, which also make nucleotide precursors. In nonproliferating adipocytes, a metabolic cycle involving malic enzyme holds the potential to make both NADPH and two-carbon units for fat synthesis. Recently developed deuterium ((2)H) tracer methods have enabled direct measurement of NADPH production by the oxPPP and folate metabolism. Here we enable tracking of NADPH production by malic enzyme with [2,2,3,3-(2)H]dimethyl-succinate and [4-(2)H]glucose. Using these tracers, we show that most NADPH in differentiating 3T3-L1 mouse adipocytes is made by malic enzyme. The associated metabolic cycle is disrupted by hypoxia, which switches the main adipocyte NADPH source to the oxPPP. Thus, (2)H-labeled tracers enable dissection of NADPH production routes across cell types and environmental conditions.

Indexed as

3T3-L1 CellsAdipocytesAdipogenesisAnimalsAntibodiesCarbonCarbon DioxideFolic AcidGene Expression Regulation, EnzymologicGene Knockdown TechniquesMalate DehydrogenaseMiceNADPOxygen ConsumptionPentose Phosphate PathwayRNA, Small InterferingAntibodiesCarbonCarbon Dioxidedimethyl succinateFolic AcidMalate DehydrogenaseNADPRNA, Small InterferingSuccinates

Identifiers

PMID26999781
PMCPMC4891982

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.