Evidence map›Paper›PMID 26999666›Full record

ArticlePloS one2016

Functional and Biochemical Characterization of Alvinella pompejana Cys-Loop Receptor Homologues.

Eveline Wijckmans, Mieke Nys, Sarah Debaveye, Marijke Brams, Els Pardon, Katrien Willegems, Daniel Bertrand, Jan Steyaert, Rouslan Efremov, Chris Ulens

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Eveline WijckmansDepartment of Cellular and Molecular Medicine, Laboratory of Structural Neurobiology, University of Leuven, Leuven, Belgium.
Mieke NysDepartment of Cellular and Molecular Medicine, Laboratory of Structural Neurobiology, University of Leuven, Leuven, Belgium.
Sarah DebaveyeDepartment of Cellular and Molecular Medicine, Laboratory of Structural Neurobiology, University of Leuven, Leuven, Belgium.
Marijke BramsDepartment of Cellular and Molecular Medicine, Laboratory of Structural Neurobiology, University of Leuven, Leuven, Belgium.
Els PardonStructural Biology Brussels, Vrije Universiteit Brussel, Brussels, Belgium.
Katrien WillegemsStructural Biology Brussels, Vrije Universiteit Brussel, Brussels, Belgium.
Daniel BertrandHiQscreen, Geneva, Switzerland.
Jan SteyaertStructural Biology Brussels, Vrije Universiteit Brussel, Brussels, Belgium.
Rouslan EfremovStructural Biology Brussels, Vrije Universiteit Brussel, Brussels, Belgium.
Chris UlensDepartment of Cellular and Molecular Medicine, Laboratory of Structural Neurobiology, University of Leuven, Leuven, Belgium.
KU Leuven · BEVIB-VUB Center for Structural Biology · BEHiQScreen (Switzerland) · CHVrije Universiteit Brussel · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cys-loop receptors are membrane spanning ligand-gated ion channels involved in fast excitatory and inhibitory neurotransmission. Three-dimensional structures of these ion channels, determined by X-ray crystallography or electron microscopy, have revealed valuable information regarding the molecular mechanisms underlying ligand recognition, channel gating and ion conductance. To extend and validate the current insights, we here present promising candidates for further structural studies. We report the biochemical and functional characterization of Cys-loop receptor homologues identified in the proteome of Alvinella pompejana, an extremophilic, polychaete annelid found in hydrothermal vents at the bottom of the Pacific Ocean. Seven homologues were selected, named Alpo1-7. Five of them, Alpo2-6, were unidentified prior to this study. Two-electrode voltage clamp experiments revealed that wild type Alpo5 and Alpo6, both sharing remarkably high sequence identity with human glycine receptor α subunits, are anion-selective channels that can be activated by glycine, GABA and taurine. Furthermore, upon expression in insect cells fluorescence size-exclusion chromatography experiments indicated that four homologues, Alpo1, Alpo4, Alpo6 and Alpo7, can be extracted out of the membrane by a wide variety of detergents while maintaining their oligomeric state. Finally, large-scale purification efforts of Alpo1, Alpo4 and Alpo6 resulted in milligram amounts of biochemically stable and monodisperse protein. Overall, our results establish the evolutionary conservation of glycine receptors in annelids and pave the way for future structural studies.

Indexed as

Sequence Homology, Amino AcidAmino Acid SequenceAnimalsCysteine Loop Ligand-Gated Ion Channel Receptorsgamma-Aminobutyric AcidGlycineGreen Fluorescent ProteinsIonsLigandsMolecular Sequence DataPolychaetaProtein MultimerizationProtein StabilityProtein SubunitsProteomeSequence Analysis, ProteinCysteine Loop Ligand-Gated Ion Channel Receptorsenhanced green fluorescent proteingamma-Aminobutyric AcidGlycineGreen Fluorescent ProteinsIonsLigandsProtein SubunitsProteomeSingle-Domain AntibodiesTaurine

Identifiers

PMID26999666
PMCPMC4801368
OpenAlexW2311031139

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.