Evidence map›Paper›PMID 26999302›Full record

ArticleACS chemical biology2016

Structure of the Human Protein Kinase ZAK in Complex with Vemurafenib.

Sebastian Mathea, Kamal R Abdul Azeez, Eidarus Salah, Cynthia Tallant, Finn Wolfreys, Rebecca Konietzny, Roman Fischer, Hua Jane Lou, Paul E Brennan, Gisela Schnapp and 4 more

Abstract read
In one paragraph

Article in ACS chemical biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

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  15. Vemurafenib Inhibits Active PTK6 inMolecular cancer therapeutics · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 3 countries.

Sebastian MatheaStructural Genomics Consortium (SGC), Nuffield Department of Medicine, University of Oxford , Oxford, OX37DQ, United Kingdom.
Kamal R Abdul AzeezStructural Genomics Consortium (SGC), Nuffield Department of Medicine, University of Oxford , Oxford, OX37DQ, United Kingdom.
Eidarus SalahStructural Genomics Consortium (SGC), Nuffield Department of Medicine, University of Oxford , Oxford, OX37DQ, United Kingdom.
Cynthia TallantStructural Genomics Consortium (SGC), Nuffield Department of Medicine, University of Oxford , Oxford, OX37DQ, United Kingdom.
Finn WolfreysTarget Discovery Institute (TDI), Nuffield Department of Medicine, University of Oxford , Oxford, OX37FZ, United Kingdom.
Rebecca KonietznyTarget Discovery Institute (TDI), Nuffield Department of Medicine, University of Oxford , Oxford, OX37FZ, United Kingdom.
Roman FischerTarget Discovery Institute (TDI), Nuffield Department of Medicine, University of Oxford , Oxford, OX37FZ, United Kingdom.
Hua Jane LouDepartment of Pharmacology, Yale University School of Medicine , New Haven, Connecticut 06520, United States.
Paul E BrennanTarget Discovery Institute (TDI), Nuffield Department of Medicine, University of Oxford , Oxford, OX37FZ, United Kingdom.
Gisela SchnappLead Discovery and Optimisation Support, Boehringer Ingelheim Pharma GmbH & Co KG , Biberach, 88400, Germany.
Alexander PautschLead Discovery and Optimisation Support, Boehringer Ingelheim Pharma GmbH & Co KG , Biberach, 88400, Germany.
Benedikt M KesslerTarget Discovery Institute (TDI), Nuffield Department of Medicine, University of Oxford , Oxford, OX37FZ, United Kingdom.
Benjamin E TurkDepartment of Pharmacology, Yale University School of Medicine , New Haven, Connecticut 06520, United States.
Stefan KnappTarget Discovery Institute (TDI), Nuffield Department of Medicine, University of Oxford , Oxford, OX37FZ, United Kingdom.
University of Oxford · GBBoehringer Ingelheim (Germany) · DEYale University · USGenomics (United Kingdom) · GB

Funding

Modeling human phosphorylation networks through kinome-wide profilingR01GM104047 · NIGMS · YALE UNIVERSITY · PI TURK, BENJAMIN E, YAFFE, MICHAEL B · 2013 to 2017
$2.4M
NIGMS NIH HHS R01 GM104047Wellcome TrustWellcome Trust 092809/Z/10/ZWellcome Trust 097813/Z/11/Z
6 · The paper itself

Abstract

The mixed lineage kinase ZAK is a key regulator of the MAPK pathway mediating cell survival and inflammatory response. ZAK is targeted by several clinically approved kinase inhibitors, and inhibition of ZAK has been reported to protect from doxorubicin-induced cardiomyopathy. On the other hand, unintended targeting of ZAK has been linked to severe adverse effects such as the development of cutaneous squamous cell carcinoma. Therefore, both specific inhibitors of ZAK, as well as anticancer drugs lacking off-target activity against ZAK, may provide therapeutic benefit. Here, we report the first crystal structure of ZAK in complex with the B-RAF inhibitor vemurafenib. The cocrystal structure displayed a number of ZAK-specific features including a highly distorted P loop conformation enabling rational inhibitor design. Positional scanning peptide library analysis revealed a unique substrate specificity of the ZAK kinase including unprecedented preferences for histidine residues at positions -1 and +2 relative to the phosphoacceptor site. In addition, we screened a library of clinical kinase inhibitors identifying several inhibitors that potently inhibit ZAK, demonstrating that this kinase is commonly mistargeted by currently used anticancer drugs.

Indexed as

Adenosine TriphosphateCalorimetryCrystallography, X-RayDrug DesignHumansIndolesLeucine ZippersMAP Kinase Kinase KinasesMolecular StructureOligopeptidesPhosphoproteinsPhosphorylationProtein Kinase InhibitorsProtein KinasesProto-Oncogene Proteins B-rafSulfonamidesadenosine 5'-O-(3-thiotriphosphate)Adenosine TriphosphateIndolesMAP3K20 protein, humanMAP Kinase Kinase KinasesOligopeptidesPhosphoproteinsProtein Kinase InhibitorsProtein KinasesProto-Oncogene Proteins B-rafSulfonamidesVemurafenib

Identifiers

PMID26999302
PMCPMC5518171
OpenAlexW2308664614

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.