Evidence map›Paper›PMID 26998411›Full record

ArticlePeerJ2016

Selection of reference genes for RT-qPCR studies in blood of beluga whales (Delphinapterus leucas).

I-Hua Chen, Jiann-Hsiung Wang, Shih-Jen Chou, Yeong-Huey Wu, Tsung-Hsien Li, Ming-Yih Leu, Wen-Been Chang, Wei Cheng Yang

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

I-Hua ChenDepartment of Veterinary Medicine, National Chiayi University , Chiayi , Taiwan, ROC.
Jiann-Hsiung WangDepartment of Veterinary Medicine, National Chiayi University , Chiayi , Taiwan, ROC.
Shih-Jen ChouDepartment of Veterinary Medicine, National Chiayi University , Chiayi , Taiwan, ROC.
Yeong-Huey WuDepartment of Veterinary Medicine, National Pingtung University of Science and Technology , Pingtung , Taiwan, ROC.
Tsung-Hsien LiDepartment of Biology, National Museum of Marine Biology and Aquarium , Pingtung , Taiwan, ROC.
Ming-Yih LeuDepartment of Biology, National Museum of Marine Biology and Aquarium, Pingtung, Taiwan, ROC; Graduate Institute of Marine Biology, National Dong Hwa University, Pingtung, Taiwan, ROC.
Wen-Been ChangDepartment of Biology, National Museum of Marine Biology and Aquarium , Pingtung , Taiwan, ROC.
Wei Cheng YangDepartment of Veterinary Medicine, National Chiayi University , Chiayi , Taiwan, ROC.
National Chiayi University · TWNational Museum of Marine Biology and Aquarium · TWNational Dong Hwa University · TWNational Pingtung University of Science and Technology · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Reverse transcription quantitative PCR (RT-qPCR) is used for research in gene expression, and it is vital to choose appropriate housekeeping genes (HKGs) as reference genes to obtain correct results. The purpose of this study is to determine stably expressed HKGs in blood of beluga whales (Delphinapterus leucas) that can be the appropriate reference genes in relative quantification in gene expression research. Sixty blood samples were taken from four beluga whales. Thirteen candidate HKGs (ACTB, B2M, GAPDH, HPRT1, LDHB, PGK1, RPL4, RPL8, RPL18, RPS9, RPS18, TFRC, YWHAZ) were tested using RT-qPCR. The stability values of the HKGs were determined by four different algorithms. Comprehensive analysis of the results revealed that RPL4, PGK1 and ACTB are strongly recommended for use in future RT-qPCR studies in beluga blood samples. This research provides recommendation of reference gene selection, which may contribute to further mRNA relative quantification research in the peripheral blood leukocytes in captive cetaceans. The gene expression assessment of the immune components in blood have the potential to serve as an important approach to evaluating cetacean health influenced by environmental insults.

Indexed as

BelugaGene expressionHousekeepingQuantitative PCR

Identifiers

PMID26998411
PMCPMC4797766
OpenAlexW2283909694

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.