Evidence map›Paper›PMID 26997265›Full record

ArticleCell reports2016

Structural Model of the Extracellular Assembly of the TCR-CD3 Complex.

Aswin Natarajan, Vidushan Nadarajah, Klara Felsovalyi, Wenjuan Wang, Vivian R Jeyachandran, Riley A Wasson, Timothy Cardozo, Clay Bracken, Michelle Krogsgaard

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 55 citations in OpenAlex.

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  15. Ultrasmall silica nanoparticles directly ligate the T cell receptor complex.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  16. Single-molecule investigations of T-cell activation.Current opinion in biomedical engineering · 2019
    Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Aswin NatarajanLaura and Isaac Perlmutter Cancer Center, New York University School of Medicine, New York, NY 10016, USA.
Vidushan NadarajahLaura and Isaac Perlmutter Cancer Center, New York University School of Medicine, New York, NY 10016, USA.
Klara FelsovalyiDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY 10016, USA.
Wenjuan WangLaura and Isaac Perlmutter Cancer Center, New York University School of Medicine, New York, NY 10016, USA.
Vivian R JeyachandranLaura and Isaac Perlmutter Cancer Center, New York University School of Medicine, New York, NY 10016, USA.
Riley A WassonLaura and Isaac Perlmutter Cancer Center, New York University School of Medicine, New York, NY 10016, USA.
Timothy CardozoDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY 10016, USA.
Clay BrackenDepartment of Biochemistry, Weill Cornell Medical College, New York, NY 10065, USA.
Michelle KrogsgaardLaura and Isaac Perlmutter Cancer Center, New York University School of Medicine, New York, NY 10016, USA; Interdiciplinary Cooperative Melanoma Group, New York University School of Medicine, New York, NY 10016, USA; Department of Pathology, New York University School of Medicine, New York, NY 10016, USA. Electronic address: michelle.krogsgaard@nyumc.org.
New York University · USCornell University · USEastern Cooperative Oncology Group · US

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
900 MHz NMR Spectrometer for Structural BiologyP41GM066354 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI COWBURN, DAVID · 2002 to 2006
$4.7M
Chemical Biology Design For MalariaDP2OD004631 · OD · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CARDOZO, TIMOTHY J · 2008 to 2014
$3.1M
EXTRAMURAL RESEARCH FACILITIES CONSTRUCTIONC06RR015495 · NCRR · NEW YORK STRUCTURAL BIOLOGY CENTER · PI RIFKIND, RICHARD A · 2000 to 2000
$2.0M
Visualizing ligand-induced signal propagation in the TCR-signaling complexR01GM085586 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KROGSGAARD, MICHELLE · 2008 to 2014
$1.5M
Acquisition of a Cold Probe and Console for a 600MHz NMR spectrometerS10OD016320 · OD · WEILL MEDICAL COLL OF CORNELL UNIV · PI BRACKEN, WILLIAM C · 2013 to 2013
$600k
Acquisition of a 500 MHz NMR SpectrometerS10RR023694 · NCRR · WEILL MEDICAL COLL OF CORNELL UNIV · PI BRACKEN, WILLIAM C · 2007 to 2007
$500k
Acquisition of a Cryoprobe for a 600 MHz NMR SpectrometerS10OD016343 · OD · NEW YORK UNIVERSITY · PI KROGSGAARD, MICHELLE, TRAASETH, NATHANIEL J. · 2014 to 2014
$360k
NCI NIH HHS 5 P30CA16087-31NCI NIH HHS CO6RR015495NCI NIH HHS P30 CA016087NCRR NIH HHS C06 RR015495NCRR NIH HHS S10 RR023694NCRR NIH HHS S10-RR023694-01NIGMS NIH HHS 5R01GM085586NIGMS NIH HHS P41 GM066354NIGMS NIH HHS P41GM066354NIGMS NIH HHS R01 GM085586NIH HHS 1S10-OD016343NIH HHS 4DP2OD004631NIH HHS DP2 OD004631NIH HHS S10 OD016320NIH HHS S10 OD016343
6 · The paper itself

Abstract

Antigen recognition of peptide-major histocompatibility complexes (pMHCs) by T cells, a key step in initiating adaptive immune responses, is performed by the T cell receptor (TCR) bound to CD3 heterodimers. However, the biophysical basis of the transmission of TCR-CD3 extracellular interaction into a productive intracellular signaling sequence remains incomplete. Here we used nuclear magnetic resonance (NMR) spectroscopy combined with mutational analysis and computational docking to derive a structural model of the extracellular TCR-CD3 assembly. In the inactivated state, CD3γε interacts with the helix 3 and helix 4-F strand regions of the TCR Cβ subunit, whereas CD3δε interacts with the F and C strand regions of the TCR Cα subunit in this model, placing the CD3 subunits on opposing sides of the TCR. This work identifies the molecular contacts between the TCR and CD3 subunits, identifying a physical basis for transmitting an activating signal through the complex.

Indexed as

Models, MolecularCD3 ComplexHumansMutagenesis, Site-DirectedNuclear Magnetic Resonance, BiomolecularProtein Interaction Domains and MotifsProtein Structure, SecondaryProtein Structure, TertiaryReceptor-CD3 Complex, Antigen, T-CellReceptors, Antigen, T-CellCD3 ComplexReceptor-CD3 Complex, Antigen, T-CellReceptors, Antigen, T-Cell

Identifiers

PMID26997265
PMCPMC4902171
OpenAlexW2298300273

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.