Evidence map›Paper›PMID 26996948›Full record

ArticleAmerican journal of human genetics2016

Pathogenic Variants in PIGG Cause Intellectual Disability with Seizures and Hypotonia.

Periklis Makrythanasis, Mitsuhiro Kato, Maha S Zaki, Hirotomo Saitsu, Kazuyuki Nakamura, Federico A Santoni, Satoko Miyatake, Mitsuko Nakashima, Mahmoud Y Issa, Michel Guipponi and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed, 1 pooled it
8.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 1 synthesis or guideline pooled it, 86 citations in OpenAlex.

  1. Pooled it
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  7. Observational
  8. PIGW-related glycosylphosphatidylinositol deficiency: A case report and literature review.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2024
    Review
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  17. PIGG variant pathogenicity assessment reveals characteristic features within 19 families.Genetics in medicine : official journal of the American College of Medical Genetics · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 9 institutions in 4 countries.

Periklis MakrythanasisDepartment of Genetic Medicine and Development, University of Geneva, Geneva 1211, Switzerland; Service of Genetic Medicine, University Hospitals of Geneva, Geneva 1211, Switzerland.
Mitsuhiro KatoDepartment of Pediatrics, Yamagata University Faculty of Medicine, Yamagata 990-9585, Japan; Department of Pediatrics, Showa University School of Medicine, Tokyo 142-8666, Japan.
Maha S ZakiDepartment of Clinical Genetics, National Research Centre, Cairo 12311, Egypt.
Hirotomo SaitsuDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama 236-0004, Japan.
Kazuyuki NakamuraDepartment of Pediatrics, Yamagata University Faculty of Medicine, Yamagata 990-9585, Japan.
Federico A SantoniDepartment of Genetic Medicine and Development, University of Geneva, Geneva 1211, Switzerland; Service of Genetic Medicine, University Hospitals of Geneva, Geneva 1211, Switzerland.
Satoko MiyatakeDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama 236-0004, Japan.
Mitsuko NakashimaDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama 236-0004, Japan.
Mahmoud Y IssaDepartment of Clinical Genetics, National Research Centre, Cairo 12311, Egypt.
Michel GuipponiService of Genetic Medicine, University Hospitals of Geneva, Geneva 1211, Switzerland.
Audrey LetourneauDepartment of Genetic Medicine and Development, University of Geneva, Geneva 1211, Switzerland.
Clare V LoganSchool of Medicine, University of Leeds, Leeds LS2 9NL, UK.
Nicola RobertsSchool of Medicine, University of Leeds, Leeds LS2 9NL, UK.
David A ParrySchool of Medicine, University of Leeds, Leeds LS2 9NL, UK.
Colin A JohnsonSchool of Medicine, University of Leeds, Leeds LS2 9NL, UK.
Naomichi MatsumotoDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama 236-0004, Japan.
Hanan HamamyDepartment of Genetic Medicine and Development, University of Geneva, Geneva 1211, Switzerland.
Eamonn SheridanSchool of Medicine, University of Leeds, Leeds LS2 9NL, UK.
Taroh KinoshitaDepartment of Immunoregulation, Research Institute for Microbial Diseases, and World Premier International Immunology Frontier Research Center, Osaka University, Osaka 565-0871, Japan.
Stylianos E AntonarakisDepartment of Genetic Medicine and Development, University of Geneva, Geneva 1211, Switzerland; Service of Genetic Medicine, University Hospitals of Geneva, Geneva 1211, Switzerland; Institute of Genetics and Genomics of Geneva, University of Geneva, Geneva 1211, Switzerland. Electronic address: stylianos.antonarakis@unige.ch.
Yoshiko MurakamiDepartment of Immunoregulation, Research Institute for Microbial Diseases, and World Premier International Immunology Frontier Research Center, Osaka University, Osaka 565-0871, Japan. Electronic address: yoshiko@biken.osaka-u.ac.jp.
University of Leeds · GBYokohama City University · JPUniversity Hospital of Geneva · CHUniversity of Geneva · CHNational Research Centre · EGOsaka International University · JPOsaka University · JPShowa University · JPYamagata University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Glycosylphosphatidylinositol (GPI) is a glycolipid that anchors >150 various proteins to the cell surface. At least 27 genes are involved in biosynthesis and transport of GPI-anchored proteins (GPI-APs). To date, mutations in 13 of these genes are known to cause inherited GPI deficiencies (IGDs), and all are inherited as recessive traits. IGDs mainly manifest as intellectual disability, epilepsy, coarse facial features, and multiple organ anomalies. These symptoms are caused by the decreased surface expression of GPI-APs or by structural abnormalities of GPI. Here, we present five affected individuals (from two consanguineous families from Egypt and Pakistan and one non-consanguineous family from Japan) who show intellectual disability, hypotonia, and early-onset seizures. We identified pathogenic variants in PIGG, a gene in the GPI pathway. In the consanguineous families, homozygous variants c.928C>T (p.Gln310(∗)) and c.2261+1G>C were found, whereas the Japanese individual was compound heterozygous for c.2005C>T (p.Arg669Cys) and a 2.4 Mb deletion involving PIGG. PIGG is the enzyme that modifies the second mannose with ethanolamine phosphate, which is removed soon after GPI is attached to the protein. Physiological significance of this transient modification has been unclear. Using B lymphoblasts from affected individuals of the Egyptian and Japanese families, we revealed that PIGG activity was almost completely abolished; however, the GPI-APs had normal surface levels and normal structure, indicating that the pathogenesis of PIGG deficiency is not yet fully understood. The discovery of pathogenic variants in PIGG expands the spectrum of IGDs and further enhances our understanding of this etiopathogenic class of intellectual disability.

Indexed as

Genetic VariationAbnormalities, MultipleAdolescentCell Line, TumorChildConsanguinityEgyptGenotyping TechniquesGlycosylphosphatidylinositolsHEK293 CellsHeterozygoteHomozygoteHumansInfantIntellectual DisabilityJapanGlycosylphosphatidylinositolsMannosyltransferases

Identifiers

PMID26996948
PMCPMC4833197
OpenAlexW2298871205

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.